Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01201 ATGTTAGTGAAAAACCACAACAAAGGGGATGGATCCAAGTCCCTGGCCGATACACTGGCGAGATGGAAAGAATATAATGCTTGGCTTGAATCTGGCAATGAGGCTGAGAAGGCAGTTAGGAAAGTTCCTGCCAAAGGATCAAAGAAGGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGTTGTAACTACCGAGGAGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTCTGGTTGGGTACTTTTCCCACTGCAATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAGAGCTATGTATGGTTCTGGTGCACGCCTCAACTTCCCCAACGTTGAAGTTTCAACTTTGTCTGAGGAAACATCAAGAAACTCTCCAGCTGCTTGTCAATCTGGTTCTGCGTTGATGATATCAGAGGGTTCTGAATGTATGATATTTCCGAACAGCTCTGGGGGAGACACACCTAAGGATGATGACATGGAAGGCCTTTCCTTATCCTTAAGTGTTAAACATGAGGTAGTGGAGGGTGAATCCGGGACCAGTTTACCCCATCTTTCATTGTCTTGA 600 0.47 MLVKNHNKGDGSKSLADTLARWKEYNAWLESGNEAEKAVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAALAYDEAARAMYGSGARLNFPNVEVSTLSEETSRNSPAACQSGSALMISEGSECMIFPNSSGGDTPKDDDMEGLSLSLSVKHEVVEGESGTSLPHLSLS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01201 199 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Phco9g01201 199 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Phco9g01201 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 144 - -
Phco9g01201 199 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Phco9g01201 199 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Phco9g01201 199 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Phco9g01201 199 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Phco9g01201 199 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Phco9g01201 199 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Phco9g01201 199 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01201 Phco-Chr9 11594947 11595546 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco9g01201 AP2 1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01275 10 35023693 35024301 Phco9g01201 9 11594947 11595546 PCT