Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01275 ATGCACATGTTAGCGAAATCACATAGTAAAGGGGATGGAAGCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGCAAAGATGCGGATAAGCCAGTTCGCAAAGTTCCTGCCAAGGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGGGGGCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCGAACAGAGGGAACAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAGGAATCCTCCAAAGATTCTCCAGTGGCGAATCATTCTGGTTCCTCAATGGCAGTGTCTGCAAATGAATCCATGGTTTCTCCAAGTGACTCTGAGGGGGGAGGCGAAGAAGAAGAGGATGTTGGTATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACATGAGAACGGGGATGGTGAATCAGGGATAAGTTCATCCCCTCCTTCTTCTTCATAG 609 0.4828 MHMLAKSHSKGDGSKSLAKILAKWKEYNAQLDSCKDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPVANHSGSSMAVSANESMVSPSDSEGGGEEEEDVGMEPISLSLSVKHENGDGESGISSSPPSSS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01275 202 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Phco10g01275 202 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 167 - -
Phco10g01275 202 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Phco10g01275 202 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Phco10g01275 202 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Phco10g01275 202 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Phco10g01275 202 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Phco10g01275 202 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Phco10g01275 202 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Phco10g01275 202 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Phco10g01275 202 MobiDBLite consensus disorder prediction 129 202 - -
Phco10g01275 202 MobiDBLite consensus disorder prediction 129 160 - -
Phco10g01275 202 MobiDBLite consensus disorder prediction 39 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01275 Phco-Chr10 35023693 35024301 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco10g01275 AP2 3.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01275 10 35023693 35024301 Phco9g01201 9 11594947 11595546 PCT