Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01277 ATGTCTTCTTCAACTATTATCAGTGCAATTGCAGAGCCTGGAGTTTCATCTTATACCTCGTTTGGTTATCGCAATCGGCCACCATTGATGAATCAGCTACGCAACGTATCCTGCAAAACATCAACACCAACCATCATGCAATTATCCATCGACTCTCTCCCTCTCACTCAAAAGGTGCCTAGTCGAACTAATCCTATGATGACAAGTTTGGAGCAAATTAAAATAAGAATCCAAGAGGTATTACTAAAATCAAATGATTCATTGGAAACATTGAAGTTGATTGATAACATTCAAAGACTGGGAATTGAGCACCATTTCGAAGAAGAGATCAACTTACAGCTTGGAAAAGTAGGAAATTGTAACAATTCTCAAGACCTCTCTGCCGCAGCTCTTCAATTTCGCTTGTTGAGACATAATGGCTGGTCTACATCTTCAGATGTTTTCAATAAGTTTTTGGACAAAAGTGGGAATTTCAAGGAATCGTTCAATAGAGACATTTGGGGCATGTTAAGTTTGTACGAGGCATCATATTTTGGTGCACAAGGTGAAGAAGTACTACAACATGCCATGGAGTTCTCAAGGGCTCATCTGCACCTGTCACTACCACTCCTAAGTCCTGAAGTAGGAAGAGTAATTGTTGAAGCCTTAAAACTTCCAAGACACCAAAGAATGAGTAAGTTGGAAGCAAAAAATTACATGGTACAATATAGCACAGAAAGTAGCCAAATTCCTGCTCTTCTAGAATTTGCAAGGATAGAGTATGACACGGTTCAGTCGATGCACCAGAGTGAATTAGCAGAGATCTCAAGGTGGTGGAAAAACTTGGGACTTATCGAAAGACTTGGGTTTGGAAGAGATGGACCAAGAGAGTGCTTCCTCTGGATGTTGGGAGTTTTTCCAGAACCATGTTATTCACATTGTCGTATTGAACTTGCAAAAGCTATTTGCATTTTGCAAGTTCTTGATGATATGTTTGACACTTATGGAACATTAGATGAACTTATTCTTTTCACTGAGGCAGTACAAAGGTGGGATCTTGATGCAATGGAGAAACTCCCTGAATATATGAAGATATGTTACATGGCCTTGTATAACACCACCCATGAGATTGCATACAGAATTCAGAAGGATTATGGGCAAACTGTTGTTGCTTGTTTGAAAAGAACATGGATAGACTTACTAGAAGCTTATCTAATAGAAGCAAAATGGTTCAACAACAAATATGTTCCTGCTTTTGGAGAATATTTGGATAATGGGGTGATTTCTTCAGGATCATGTTTGGCCTTAGTACATGCAACTTTCCTCATCGGGGATAACCTCTCAAAAGAAACCATTTCCATGATGAGTCCATATCCAAGACTATTCTCTTGTTCTGGAGAAATTCTTAGGCTTTGGGACGACTTAGGAACCTCCAAGGAGGAACAAAAGAGAGGTGATAATGCTTGTAGCATACAATGTCTCATGAAAGAAAATTATATTTTAGATGAAACTTTTGCTAGAAAGCATATAAAGCAAGTCCTAGGAAACTTATGGCCTGAGCTAAATGGTCTAGTTATGGCCACAACCACTCTACCTTTCAGTATTAGGAAGGCTTCTCTCAACATGGCTAGAACTTCTCAATTTATTTATCAACATGGCGATGATCAAACCATGCCTACAGTTAATGATCTAGTAAAAGAATTACTTTTTACACCTTCTTCCAAATCTGGAGAAGAAAGTGATACCTATTGTGTTGTATGA 1740 0.3862 MSSSTIISAIAEPGVSSYTSFGYRNRPPLMNQLRNVSCKTSTPTIMQLSIDSLPLTQKVPSRTNPMMTSLEQIKIRIQEVLLKSNDSLETLKLIDNIQRLGIEHHFEEEINLQLGKVGNCNNSQDLSAAALQFRLLRHNGWSTSSDVFNKFLDKSGNFKESFNRDIWGMLSLYEASYFGAQGEEVLQHAMEFSRAHLHLSLPLLSPEVGRVIVEALKLPRHQRMSKLEAKNYMVQYSTESSQIPALLEFARIEYDTVQSMHQSELAEISRWWKNLGLIERLGFGRDGPRECFLWMLGVFPEPCYSHCRIELAKAICILQVLDDMFDTYGTLDELILFTEAVQRWDLDAMEKLPEYMKICYMALYNTTHEIAYRIQKDYGQTVVACLKRTWIDLLEAYLIEAKWFNNKYVPAFGEYLDNGVISSGSCLALVHATFLIGDNLSKETISMMSPYPRLFSCSGEILRLWDDLGTSKEEQKRGDNACSIQCLMKENYILDETFARKHIKQVLGNLWPELNGLVMATTTLPFSIRKASLNMARTSQFIYQHGDDQTMPTVNDLVKELLFTPSSKSGEESDTYCVV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01277 579 Pfam Terpene synthase, N-terminal domain 58 198 IPR001906 GO:0010333|GO:0016829
Phco10g01277 579 SFLD Isoprenoid Synthase Type I 245 566 - -
Phco10g01277 579 FunFam Isoprene synthase, chloroplastic 214 556 - -
Phco10g01277 579 SFLD Terpene Cyclase Like 1 C Terminal Domain 245 566 IPR034741 -
Phco10g01277 579 CDD Terpene_cyclase_plant_C1 50 565 IPR044814 GO:0010333|GO:0016102
Phco10g01277 579 Gene3D Farnesyl Diphosphate Synthase 63 552 IPR008949 -
Phco10g01277 579 Pfam Terpene synthase family, metal binding domain 247 511 IPR005630 GO:0000287|GO:0010333|GO:0016829
Phco10g01277 579 SUPERFAMILY Terpenoid synthases 244 563 IPR008949 -
Phco10g01277 579 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 62 240 IPR008930 -
Phco10g01277 579 Gene3D - 86 242 IPR036965 GO:0010333|GO:0016829
Phco10g01277 579 PANTHER OS04G0344100 PROTEIN-RELATED 76 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01277 Phco-Chr10 35055861 35061247 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01277 10 35055861 35061247 Phco10g01277 10 35055861 35061247 ECH
Phco10g01277 10 35055861 35061247 Phco9g01194 9 11447627 11452123 PCT