Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01163 ATGGATTATCCGTCGGCGCAGAAGGAGGTGAATGAACCTTTGGCGGTGCCAGAAGAATCGTTACCTCAACAACCATCTTTTTCTCGATCTTTCGGCTCCAGACATGGATCCTCCGGTGAACTTGAGCAGATACTCACAGACACTAGCGTCCCTTACACAAAGCGTGTTGGAGCAGCAACATGGCTGGAGTTTAAGCTCCTGTTCAACCTTGCTGCTCCCGCTGTCATGGTCTACCTGATCAACTATGTCATGTCTATGTCCACACAAATCTTCTGCGGCCACCTCGGCAACCTCGAGCTCGCTGCATCTTCCCTCGGAAACAATGGCATCCAAATCTTCGCTTATGGCCTCATGTTGGGTATGGGAAGTGCCGTTGAGACGCTATGTGGACAAGCATACGGAGCGAAGAAATTCCACATGTTAGGTATATACCTGCAACGATCCACAGTGCTGCTCTCACTCGCAGGCGTTCTACTAACCATTATCTACGTCTTCGCGGAACCAATCCTACTGATGCTCGGCGAGTCGCCGGAAATCGCGGCGGCGGCGGCGCTTTTCGTGTACGGACTCATCCCTCAGATCTTCGCCTACGCCGTGAACTTCCCCATCCAGAAGTACCTCCAGGCGCAGAGCATCGTGGCGCCGAGCTCGTACATTTCATGCGCCGCGCTCGTGTTCCACCTCGCGCTGAGTTGGGTGGCGGTGCAGAAGCTGGGGATGGGCCTATTTGGTGCGGCGCTTGTGCTCAGTCTCTCCTGGTGGATCATCGTGATCGCGCAGTTCTTTTACATCGTGAAGAGTGAGAGGTGCAAGCAGACGTGGGCCGGCTTCAGCTTCGAAGCGTTTTCGGGGTTGCCGGAGTTTTTCAAACTTTCGGCGGCTTCGGCGGTGATGCTCTGCCTAGAGACGTGGTACTTTCAAATTCTTGTGCTGCTCGCAGGGTTGCTTCCTGAGCCTGAGTTGGCTCTCGATTCCCTTTCCATTTGTACCACAATATCTGGATGGGTGTTCATGATCTCAGTTGGGTTTAACGCAGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCAAGAAATCCAAAATCAGCTTCATTTTCTGTGATGGTGGTGACAGTGATATCTTTCATAATATCGGTTATTGTAGCAGCGGTGATTTTGTCGCTAAGAGATGTCATTAGCTATGTATTCACTGAAGGAGAAGAGGTGGCTGCTGCTGTATCAGATCTTTGTCCCCTTCTTGCTCTTTCCATTGTCCTCAACGGCATTCAACCTGTTCTGTCTGGGGTGGCTGTTGGATGTGGATGGCAAACTTTTGTTGCGTACGTGAACGTTGGTTGTTATTATGGAGTTGGCATTCCATTGGGTGCGGTTATGGGTTTCTATTTCAAATTCAATGCAAAGGGAATATGGTTAGGAATGCTAGGTGGCACTGTCTTGCAAACCATTATTTTAATGTGGGTCACATTTAGAACTGATTGGAAAAAAGAGGTTGTGGAAGCAGAAAAGAGGTTGAATCTGTGGGAAGACGCGAAGGAGCCACTTCTCAAGAACTGA 1554 0.5032 MDYPSAQKEVNEPLAVPEESLPQQPSFSRSFGSRHGSSGELEQILTDTSVPYTKRVGAATWLEFKLLFNLAAPAVMVYLINYVMSMSTQIFCGHLGNLELAASSLGNNGIQIFAYGLMLGMGSAVETLCGQAYGAKKFHMLGIYLQRSTVLLSLAGVLLTIIYVFAEPILLMLGESPEIAAAAALFVYGLIPQIFAYAVNFPIQKYLQAQSIVAPSSYISCAALVFHLALSWVAVQKLGMGLFGAALVLSLSWWIIVIAQFFYIVKSERCKQTWAGFSFEAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPEPELALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARNPKSASFSVMVVTVISFIISVIVAAVILSLRDVISYVFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGVGIPLGAVMGFYFKFNAKGIWLGMLGGTVLQTIILMWVTFRTDWKKEVVEAEKRLNLWEDAKEPLLKN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01163 517 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco9g01163 517 Pfam MatE 295 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco9g01163 517 NCBIfam MATE family efflux transporter 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco9g01163 517 MobiDBLite consensus disorder prediction 21 39 - -
Phco9g01163 517 Coils Coil 490 510 - -
Phco9g01163 517 MobiDBLite consensus disorder prediction 1 39 - -
Phco9g01163 517 CDD MATE_eukaryotic 63 497 IPR045069 GO:0042910|GO:1990961
Phco9g01163 517 PANTHER MULTIDRUG RESISTANCE PROTEIN 58 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01163 Phco-Chr9 10912266 10916981 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01163 9 10912266 10916981 Phco9g01163 9 10912266 10916981 ECH
Phco10g01314 10 35534185 35538491 Phco9g01163 9 10912266 10916981 PCT