Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01314 ATGGAGACGGAACCGCTCTTGGGATCGTTTTCCTCTGTGGAGGAAACTCCTCGCTCGAATTCCAAGCACGGCTTCAATGGGAAACTTGAGAGAATTCTCACAGACGATACCCTCCCTTTCCTCCGCCGTATGGGGGCCGCCTTGTGCGTCGAATTCAGGCTCCTCTTCTTCCTCGCCGCCCCTGCGGTGGTTGTCTACCTCATCAACTACGTCATGTCCATGTCCACGCAAATGTTCTCCGGCCACCTCGGTAACCTTGAACTCGCTGCCTCCTCCCTCGGCAACAACGGCATCCAAATCTTCGCTTATGGCCTCATGTTGGGAATGGGGAGTGCGGTTGAGACGCTATGCGGACAGGCATACGGTGCGCGGAAGTTTGGGATGCTAGGCGTGTACATGCAGCGCTCAACGGTGCTTCTCTCATTGGCCGGCATCGCTGTGACGGTCATATACGCATTTAGTGAGCCCATTTTAGTTTTCCTCGGCCAGTCGGAGCAAATCGCAGCGGCGGCGGCGCTCTTCGTGTACGGTTTGATTCCTCAGATCTTCGCATACGCGGCGAACTTCCCTATCCAGAAGTTTATGCAGGCGCAGAGCATAGTGGCGCCGAGCGCGTACATCTCAGCGGTGACGCTGATGGTCCACCTGTTGCTGAGCTGGGTGGTGGTGTACAAGATTGGGATGGGGCTGTTTGGTGCGTCGCTGGTGCTGAGCCTGTCCTGGTGGATCATCGTGATTGCTCAGTACGTGTACATCGTGTATAGCCCAAGGTGCAGGCGGACGTGGCAGGGGTTCACGTGGCAGGCTTTTTCTGGGTTATCGGCGTTCTTCAAGCTCTCTGCAGCTTCCGCAGTTATGCTGTGTTTGGAAACGTGGTACTTTCAAATTCTCGTGCTGCTTGCCGGCCTGCTTCCTCACCCTGAATTGGCCCTCGATTCGCTTTCTATCTGTACCACAATTTCTGGATGGGTGTTCATGATCTCTGTTGGATTCAACGCCGCCGCAAGTGTGAGGGTGGGCAACGAACTCGGAGCAGGAAATCCAAAATCAGCGTCCTTTTCGGTGGTGGTGGTCACAGCGGTTTCTTTCATGATATCAGTTATTGCAGCAGTGGCAGTTATTGTATTTAGGGATGTCATTAGCTATGCCTTCACAGGGGGTGAAGTGGTTGCTGCTGCAGTTTCAGATCTTTGCCCACTGCTTGCTCTTGCTATTGTCCTCAATGGCATTCAGCCGGTCTTATCCGGGGTGGCTGTTGGATGTGGTTGGCAAGCTTTCGTAGCTTATGTAAACGTAGGTTGTTATTATGGAGTTGGCTTACCACTGGGTTCGGTTCTAGGCTTTTATTTTGATTTCGGTGCCAAGGGAATATGGCTGGGAATGTTAGGTGGCACCGCCATGCAAACAATTATCCTAATTTGGGTGACATTTATAACGGACTGGAATAAGGAGGTAGAGGAAGCAGCCAAGAGGTTGAGCTTATGGGAGGACAAGAAGGAGCCAGTACTAAACTGA 1515 0.5274 METEPLLGSFSSVEETPRSNSKHGFNGKLERILTDDTLPFLRRMGAALCVEFRLLFFLAAPAVVVYLINYVMSMSTQMFSGHLGNLELAASSLGNNGIQIFAYGLMLGMGSAVETLCGQAYGARKFGMLGVYMQRSTVLLSLAGIAVTVIYAFSEPILVFLGQSEQIAAAAALFVYGLIPQIFAYAANFPIQKFMQAQSIVAPSAYISAVTLMVHLLLSWVVVYKIGMGLFGASLVLSLSWWIIVIAQYVYIVYSPRCRRTWQGFTWQAFSGLSAFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTISGWVFMISVGFNAAASVRVGNELGAGNPKSASFSVVVVTAVSFMISVIAAVAVIVFRDVISYAFTGGEVVAAAVSDLCPLLALAIVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYGVGLPLGSVLGFYFDFGAKGIWLGMLGGTAMQTIILIWVTFITDWNKEVEEAAKRLSLWEDKKEPVLN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01314 504 CDD MATE_eukaryotic 51 487 IPR045069 GO:0042910|GO:1990961
Phco10g01314 504 Coils Coil 478 498 - -
Phco10g01314 504 MobiDBLite consensus disorder prediction 1 23 - -
Phco10g01314 504 Pfam MatE 61 221 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco10g01314 504 Pfam MatE 283 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco10g01314 504 NCBIfam MATE family efflux transporter 61 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco10g01314 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 47 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01314 Phco-Chr10 35534185 35538491 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01314 10 35534185 35538491 Phco10g01314 10 35534185 35538491 ECH
Phco10g01314 10 35534185 35538491 Phco9g01163 9 10912266 10916981 PCT