Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01101 ATGGAAGAAATGGAGGTTCCTGCCCTTTTCCTCTGCCCAGTTTCTTTGCAGCTTATGAGAGACCCCGTGACAGTGTGCACAGGAATCACATATGACAGAGAAAACATTGAGAGATGGCTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCATCCACAATGCATGGCTTGGACTTGAAACCTTTTCATCTCCAAAGACAACCATTGACCAAACTGAGATTGTCAAACTTCTCTTAGAGGCAAAGAAATTCCCGGAAAAACAGCTCAACTGTCTTAGTAGGCTTCAATATATTGCTTTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCTGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAACTGTTATGAGTGAAGTAGCTATAGAAATCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAACCCTGATGAACAATGATGGGACTCAGTTTGTCGTGTCTTTGCTTCATGTATTGAAGCTTGGAAATTGCCAATCTCGAGGTTATACAACTTTGCTATTGAAGTCAGCATTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACGCCAGAGCTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCAGTAGAGGCTTCAAAGGCAGCATTGAAACTTCTGGTGGAGTTGTGTTCGTGGGGCAGAAACAAGATCAAAGCAGTTCAGAATGGTGGGGTTTTAGTCCTCGTTGAGCTACTTCTTGACGTGTCTGAAAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGACAAACTTTGTGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGGCAAAGAAAATTCTGAGGGTGTCACCAGTTGCAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTTGTAGGCATTCAGCCACCCCTAGAGTTCTTCATGAAATGCTGCTACTAGGGGCAGTGTCAAAGTTGTGTTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCTAGGGAGACACTCAAATTGCACTCTCTAGTTTGGAGGAATTCCACATGTATTCCTGTCCCTTTGCTTGCATCCTATCCATGA 1200 0.435 MEEMEVPALFLCPVSLQLMRDPVTVCTGITYDRENIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLQRLIQAWCIHNAWLGLETFSSPKTTIDQTEIVKLLLEAKKFPEKQLNCLSRLQYIAFESESNKICLESAGAIDFLASTMMINSTVMSEVAIEIMFHLNPSESQLKTLMNNDGTQFVVSLLHVLKLGNCQSRGYTTLLLKSAFKVASPTQLNNVTPELFVEIIRVLRDQISVEASKAALKLLVELCSWGRNKIKAVQNGGVLVLVELLLDVSERRACELMLIALDKLCGCAEGRAELVNHGAGVAVVAKKILRVSPVASDRGVKILTSICRHSATPRVLHEMLLLGAVSKLCLVLQVEGCFKAKERARETLKLHSLVWRNSTCIPVPLLASYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01101 399 PANTHER WDSAM1 PROTEIN 2 391 IPR045185 GO:0061630
Phco9g01101 399 CDD RING-Ubox_PUB 7 61 IPR045210 -
Phco9g01101 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Phco9g01101 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Phco9g01101 399 Gene3D - 77 385 IPR011989 -
Phco9g01101 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Phco9g01101 399 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Phco9g01101 399 SUPERFAMILY RING/U-box 3 82 - -
Phco9g01101 399 SUPERFAMILY ARM repeat 107 361 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01101 Phco-Chr9 9978542 9979741 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01361 10 36145410 36146621 Phco9g01101 9 9978542 9979741 PCT