Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01361 ATGGATGAAGTTGAAATTCCTGCTCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACTGTTTGCACAGGAATCACTTATGATAGGGAGAACATAGAGAAATGGTTGTTTTCATGCAAGAACAACACATGCCCCGTCACCAAGCAGTGCCTACTAGACCATGATCTCACCCCAAACCACACTCTACGCAGGTTGATCCAATCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAGCGCATTCCAACTCCAAAGTTACCCATTGACAGAACTCAGATTGTGAAACTCCTCACAGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAATGTCTCACAAGGCTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAAGACCTGTTTAGAGTCTGCAGGAGTTGTTGAATTCTTAGCCTCAACTATGAAGCACAAGACAGAAGAAAACTCAACTGTTCTTCTCTGTGAAGCAGCCATCGAAGTCTTATTCCACCTTAACCCTTCTGAGGCTCAGCTTAAAGCTCTCATATATAAAGAGGGGTTTCAGTTTATTGAGTCATTGTTCCACGTGTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCAACCATGCTACTTAGATCAGCATTGGAGGTTGCTGATCCTATCCAACTGATCAGTGTCAAAACAGTGCTGTTTGTGGAAATCTTGCGCGTGCTGCGTGATCAGATTTCACAACAGGCTTCCAAGGCAGCATTGAAGCTGATTGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTCATTGAGCTACTTCTTTGTACCTCTGAAAGAAGAACATGTGAACTCATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCGGAGTTATTGAACCATGCTGCAGGGTTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCTCGTGGCAAGTGATAGAGGGGTTAGAATTTTTGCCTCCATTTGTAGGTATTCCGCCAATGCTAGAGTGCTTCATGAAATGTTGCAGGTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGAATTGCGGTTTCAAGACTAGAGAAAGGGCCAAGGAGATACTCAAATTGCATTCCTCAGTTTGGAAGAATTCCCCATGTATTCCTGTACCTTTGTTATCTTCCTTTCCTTGA 1212 0.4521 MDEVEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNNTCPVTKQCLLDHDLTPNHTLRRLIQSWCTLNASLGVERIPTPKLPIDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNKTCLESAGVVEFLASTMKHKTEENSTVLLCEAAIEVLFHLNPSEAQLKALIYKEGFQFIESLFHVLRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHAAGLAIVSKKILRVSLVASDRGVRIFASICRYSANARVLHEMLQVGAVSKLCLVLQVNCGFKTRERAKEILKLHSSVWKNSPCIPVPLLSSFP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01361 403 SUPERFAMILY RING/U-box 3 77 - -
Phco10g01361 403 CDD RING-Ubox_PUB 7 60 IPR045210 -
Phco10g01361 403 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Phco10g01361 403 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Phco10g01361 403 SUPERFAMILY ARM repeat 97 311 IPR016024 -
Phco10g01361 403 Gene3D - 95 388 IPR011989 -
Phco10g01361 403 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Phco10g01361 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Phco10g01361 403 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Phco10g01361 403 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01361 Phco-Chr10 36145410 36146621 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01361 10 36145410 36146621 Phco10g01361 10 36145410 36146621 ECH
Phco10g01361 10 36145410 36146621 Phco9g01101 9 9978542 9979741 PCT