Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01100 ATGGCAGAAGTTGAAATTCCTCAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTGACAGGGATTACATATGATAGAGAAGGCATAGAGGAGTGGTTGCGTAAGGCCAAACATTGTGTGTGTCCTGTTACCAAACAATCACTTCCAAGGAGCACTCAATACTTAACCCCTAACCACACACTTCGGAGGCTTATTCAAGCTTGGTGTTCAGCAAACACAGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAGCTTCTGAAGGGTCTTGAGGCTCCTCATTCTTGTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCCACACAAAACCAGAGGAACAGAACTTGCATGGCTGAGGCTGGTGTGGCCAAGGCCATGGTCAAAGTGATTAACAAGAATTTCAAAGATGGAAACACAAACACCAGTTCCGTAGAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAATCACAGCAGCATGAAACCTCTAGTTGGGGAGAGCTTGGACTTCATCAACTCTTTGACTTGGATTTTGAAGCATCATTTGGATGACAACAACATCAAGATGGTAAACGAAGCAATGCCCCTTTTAAAGTTGACAATCGAAGTTGCTGACTCAACCCTTTTGGGAAATTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAGCATTGAGAAAAAGAGCTCTATCTCAACAAACTATCAAATCTGCTTTGCATGTGCTTATACAAACTAGCCTTCTGGGTAGAAACAGAACGAGAATTGTTGAAGCAGGTGCAGTCACCCAACTCATAGAGCTTGAGCTTGAGAAACCTGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCCCATCTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTGTAAGACATGCTGCGGGCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTCTCAGCATCAAATACAGTTGTTCTAGAGATGCTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCCTATTTGAAAGATAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAACTGTATTTGTTTACTAGGCACCAAAGGTGA 1233 0.429 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDREGIEEWLRKAKHCVCPVTKQSLPRSTQYLTPNHTLRRLIQAWCSANTANGVDRIPTPKTPLSMIQVQKLLKGLEAPHSCGTSLEKLHALATQNQRNRTCMAEAGVAKAMVKVINKNFKDGNTNTSSVEEALRIVHLLWNNHSSMKPLVGESLDFINSLTWILKHHLDDNNIKMVNEAMPLLKLTIEVADSTLLGNLSLEFFKEMVRALRKRALSQQTIKSALHVLIQTSLLGRNRTRIVEAGAVTQLIELELEKPEKNMTELIFNLLAHLCSCADGREQFVRHAAGIAVVSKRVLRVSAATDDRAIHVFSVIAKFSASNTVVLEMLRVGAVSKLCMVMQADCASYLKDKARDILRLHSKVWNNSPCIQLYLFTRHQR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01100 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Phco9g01100 410 SUPERFAMILY RING/U-box 3 84 - -
Phco9g01100 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Phco9g01100 410 Gene3D - 103 394 IPR011989 -
Phco9g01100 410 CDD RING-Ubox_PUB 7 59 IPR045210 -
Phco9g01100 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Phco9g01100 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Phco9g01100 410 SUPERFAMILY ARM repeat 115 383 IPR016024 -
Phco9g01100 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 82 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01100 Phco-Chr9 9930856 9932088 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01362 10 36157849 36159090 Phco9g01100 9 9930856 9932088 PCT