Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01362 ATGACAGAAATTGAAATTCCTCAGTTTTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACAACCGTTACGGGCATAACCTACGACAGAGAAAGCATAGAATACTGGTTGCTCAAAGCTAAACATTGCACGTGTCCAATCACACAGCAACCATTGCCGCGAAACTCAGAGTTCTTGACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCGAATGAAGCAAAGGGTGTTGATCAAATTCCGACACCGAAATCCCCTCTTAGCAATGCCAACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCACCACGCTTTCAAAACGCAATGGAGAAGTTGCATAACCTTGCAGTAGAGAACGAGAGGAACAGAAGGTGTATGGCTTCAGCGGGTGTAGCAGAAGCTATGGTGCAGGTGATCACAAAGAGTTTCACGCCGGACAAAACGACGTCGTGCATTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGTGCCAATGTGATGGACAATAACTACATGAAGCGCTTGCTGGGTCAGAACTTTGACTTTCTGAGCTCGTTGACTCGGGTTTTGCAGCTTCAAACTAAGAACAACGTTAAGGTAATAAATGAAGCAATGCCTATATTGAAATTGACAATTGAAGCCAAAGATTCAACCCCTTTAGGAAACTTAGGGCTTGAATTCTTCAGAGTGGTTGTGAAGGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTATTAAATCGGCATTGTATGTGCTCATAGAAACGTGTCCTTTGGGGAGAAATAGAACGAAGATAGTTGATGCAGGTGCGGTGGAGGAGCTCGTTGAACTTGCACTTGAAAACCCAGAAAAGAATCTAACAGAACTCGTATTCATCCTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGACCAGTTTCTGCAGCACGCTGCAGGCATTGCTGTGGTTTCCAAAAGAATCCTTAGGGTTTCTCCAACCACCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTCTCAGCGTCTCATGAAGTAGTACAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAAGTGTACTTAGGTTACACTCCAAAACATGGAATAATTCTCCCTGTATTCAAGTATATTTGTTAACCAGATTCCAAAGGTGA 1242 0.4444 MTEIEIPQFFACPISLQIMKDPVTTVTGITYDRESIEYWLLKAKHCTCPITQQPLPRNSEFLTPNHTLRRLIQAWCSANEAKGVDQIPTPKSPLSNANVEKLVKDLEVPPRFQNAMEKLHNLAVENERNRRCMASAGVAEAMVQVITKSFTPDKTTSCIEEALRILRLLWSSANVMDNNYMKRLLGQNFDFLSSLTRVLQLQTKNNVKVINEAMPILKLTIEAKDSTPLGNLGLEFFRVVVKVMKNRELSQQAIKSALYVLIETCPLGRNRTKIVDAGAVEELVELALENPEKNLTELVFILLAHLCSCADGRDQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLISKFSASHEVVQEMLRVGAVSKLCMVLQADCASYLKEKARSVLRLHSKTWNNSPCIQVYLLTRFQR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01362 413 Gene3D - 111 397 IPR011989 -
Phco10g01362 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Phco10g01362 413 SUPERFAMILY RING/U-box 3 85 - -
Phco10g01362 413 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Phco10g01362 413 SUPERFAMILY ARM repeat 113 392 IPR016024 -
Phco10g01362 413 CDD RING-Ubox_PUB 7 55 IPR045210 -
Phco10g01362 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Phco10g01362 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Phco10g01362 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01362 Phco-Chr10 36157849 36159090 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01362 10 36157849 36159090 Phco9g01100 9 9930856 9932088 PCT