Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01020 ATGTATAGCAATTTCAAAGAACAAGCAATAGAGTACGTGAAGCAAGCGGTGGATGAAGACAACAAAGGTAATTACGCGAAAGCGTTCCAACTTTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATAAAGGAGGCAATCACGCAGAAATTCACCGAGTACCTGCGTCGGGCCGAGGAGATCCGGGCCGTTCTCGACGATGGGCCTAGCGGCCCACCTTCTTCCGGGGATGCTGCCGTCGCTACCAGGCCCAAGTCCAAGCCCAAGGACGGCGCAGGCGGCGATGGGGAGGATCCTGAACAGGCCAAGCTCCGGGCCGGGCTCAACTCCGCCATCGTTAGGGAGAAGCCCGACGTGAAGTGGAACGACGTGGCGGGGCTGGAGAGCGCCAAACAGGCTCTTCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCTCAGTTTTTCACCGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCACCGGGGACGGGGAAATCGTATTTGGCCAAGGCTGTTGCAACAGAAGCTGATTCTACGTTCTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTTGAAATGGCTCGTGAGAGTGCACCTTCTATCATATTCATTGATGAAATAGATTCTTTGTGTGGTCAGCGTGGAGAGGGTAATGAGAGTGAGGCTTCAAGACGAATTAAAACTGAAGTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAGGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGACGTTTTGATAAGCGAATATACATACCCCTACCAGATTTGAAGGCTCGTCAACACATGTTCAAGGTTCACCTAGGAGATACTCCCCATAATTTGACCGAAAGCGATTTTGAACATTTGGCTCGCAAGACAGGGGGTTTTTCAGGTTCAGATATATCTGTCTGTGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATTCTGAGGGTATGTGGATTCCATGTGGACCAAAGCAACAAAGTGCAATACAAATTACAATGCAGGAGCTTGCTGCGAAAGGACTTGCTTCACAGATCCTGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGGCCGACCTCGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1302 0.48 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKSKPKDGAGGDGEDPEQAKLRAGLNSAIVREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEVLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTGGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNSEGMWIPCGPKQQSAIQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01020 433 Gene3D - 298 413 - -
Phco9g01020 433 PANTHER AAA DOMAIN-CONTAINING 18 431 - -
Phco9g01020 433 Gene3D - 125 421 IPR027417 -
Phco9g01020 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Phco9g01020 433 SMART AAA_5 162 298 IPR003593 GO:0016887
Phco9g01020 433 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Phco9g01020 433 CDD MIT_VPS4 4 76 IPR045253 -
Phco9g01020 433 Gene3D - 6 75 - -
Phco9g01020 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Phco9g01020 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Phco9g01020 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Phco9g01020 433 FunFam vacuolar protein sorting-associated protein 4A 298 413 - -
Phco9g01020 433 SUPERFAMILY MIT domain 2 83 IPR036181 -
Phco9g01020 433 CDD RecA-like_VPS4 124 294 - -
Phco9g01020 433 SMART smart 2 79 IPR007330 -
Phco9g01020 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 428 IPR027417 -
Phco9g01020 433 MobiDBLite consensus disorder prediction 71 109 - -
Phco9g01020 433 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01020 Phco-Chr9 8690926 8698594 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01020 9 8690926 8698594 Phco9g01020 9 8690926 8698594 ECH
Phco10g01412 10 36778466 36785638 Phco9g01020 9 8690926 8698594 PCT