Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01412 ATGTATAGCAATTTCAAGGAGCAGGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCCGGAAACTACGCGAAAGCGTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAAAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAAGAGATTCGGGCCGTCCTCGACGACGGCGGCCCTGGACCGGCTTCTAACGGGGACGCTGCCGTCGCCGCTAGGCCCAAGACCAAGCCTAAAGATGGTGAAGGCGGCGGCGACGGGGAGGACCCCGAGCAAGCCAAGCTCAGGGCGGGGCTCAACTCGGCCATCGTGAGGGAGAAGCCTAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAGCAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTCCCTCAGTTCTTTACGGGGAAAAGACGACCCTGGAGAGCCTTTTTGTTGTACGGACCTCCTGGAACGGGAAAATCTTATTTAGCCAAGGCAGTTGCAACAGAAGCTGAGTCTACATTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCGAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTCATTGATGAAATAGATTCCCTATGTGGTCAGCGTGGGGAAGGCAATGAGAGCGAAGCCTCAAGACGAATTAAAACAGAGCTTCTGGTTCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCCTATGCCTTGGACCAGGCAATAAGGCGACGATTTGATAAGCGCATTTATATTCCACTACCAGATTTGAAGGCTCGTCAACACATGTTCAAGGTGCATCTAGGAGATACTCCTCATAACTTGACTGAAAGTGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGATATTTCTGTCTGTGTAAAAGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCGATGTTCTTCTTTAAAAATCCCGAGGGTATGTGGATCCCGTGTGGACCAAAGCAACAGGGTGCTGTACAAACCTCAATGCAGGATCTTGCTACAAAAGGACTTGCTTCTAAGATCCTTCCACCCCCTATCACGAGGACAGATTTTGAGAAGGTACTCGCGAGACAAAGGCCTACAGTAAGCAAATCCGACCTTGGTGTTCACGAGAGATTCACGAAGGAGTTTGGAGAGGAAGGTTAA 1305 0.4927 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQTSMQDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLGVHERFTKEFGEEG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01412 434 Gene3D - 299 414 - -
Phco10g01412 434 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Phco10g01412 434 CDD RecA-like_VPS4 125 295 - -
Phco10g01412 434 PANTHER AAA DOMAIN-CONTAINING 16 432 - -
Phco10g01412 434 Gene3D - 6 75 - -
Phco10g01412 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Phco10g01412 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Phco10g01412 434 SMART AAA_5 163 299 IPR003593 GO:0016887
Phco10g01412 434 FunFam vacuolar protein sorting-associated protein 4A 299 414 - -
Phco10g01412 434 SMART smart 2 79 IPR007330 -
Phco10g01412 434 MobiDBLite consensus disorder prediction 73 110 - -
Phco10g01412 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 430 IPR027417 -
Phco10g01412 434 MobiDBLite consensus disorder prediction 91 110 - -
Phco10g01412 434 Gene3D - 126 420 IPR027417 -
Phco10g01412 434 CDD MIT_VPS4 4 77 IPR045253 -
Phco10g01412 434 FunFam Vacuolar protein sorting-associated protein 4 126 306 - -
Phco10g01412 434 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Phco10g01412 434 SUPERFAMILY MIT domain 2 81 IPR036181 -
Phco10g01412 434 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01412 Phco-Chr10 36778466 36785638 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01412 10 36778466 36785638 Phco10g01412 10 36778466 36785638 ECH
Phco10g01412 10 36778466 36785638 Phco9g01020 9 8690926 8698594 PCT