Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01003 ATGGCAACACCAAAACAGTCGTATGAGCAACACCAACAACAAACAAATGTGCAGCGTGTGAGGAATTCGGGGATGATTAACGTCAACCAGAGTCCAATGAGGGATGACAAAGAAGAGGAGATGTCAAGATCAGCTTTGGCAATGTTCAGAGCAAAGGAAGAAGAAATTGAGAGGAAGAAAATGGAGGTGAGGGATAAGGTTCATGCTTATCTGGGTCGAGTCGAGGAGGAAACAAAACGCTTGGCTGAGATTAGAGAAGAGCTTGAGGGTCTCACAGATCCATTGAGGAAGGAAGTTGCAATGGTTCGAAAGAAGATAGACAGTGTGAACAAAGAGTTAAAGCCACTGGGCCAAACCTGCCAAAGAAAGGAAAGAGAATATAAGGAAGCCCTTGACGCTTTCAATGAGAAAAACAAGGAAAAAGCTCAACTTGTTACTAAATTAATGGAGCTGGTGACTGAAAGTGAGAAGTTGAGAATGAAGAAGTTGGAGGAGTTAAGCAAAAACGCATTAGAGGAAGAACGTAGAGTGAAAGAAAGGTTAACAATGGCGTCAGAGAGAACAGTGACTTCAAACTCCACCGGTGGAGAACGACCAAAGGTGGTTGTCATAATGGGACCCACAGCTTCCGGAAAGTCGAAGCTTGCCGTTGATTTAGCTTCTCACTTCCCTGTCGAAGTCATCAACGCTGATTCCATGCAGGTCTACCGCGGCCTCGATGTTCTCTCCAACAAACTCCCTCTCTCTCACCAAAACGGAGTGCCGCATCATCTCTTGGGCACTGTTAGCCCCAACGTGGAATTCACGGCTAAAGCGTTTCGGGATTCCGCTATTCCCATTATTGATGACATATTGGCTCGCAATCGTTTGCCAGTTGTAGTTGGAGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTCTAGTTGATTCTGCAGAAGATATGGATGAAAGCTGTTTGGGTGACCCACCTGGCATCACGCAGCCTGAGAACAGTTTCCCTACCGAAAATGATGGTTCAAGCTATGGTTATGATCTGCTCAAGGATATTGATCCAGTTGCTGCTAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAGTTTGTACACTCGCACTGGTGTTCCTCCTAGTAAAGTTTTTCAAGGGAAGGCAGCGGAGAATTGGGGTCAAGTTGACAACTTAAGATATGATTGTTGCTTTGTATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGGAAGATGGATTACTCAATGAAGTCTATGACATTTATAATTTGAATGCAGATTATACTAGAGGTTTGCGACAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGTATGAAAGAGAGAGGGAATTGACTGAAGGATCCAGCATAGAAAAGGGCAAGACGTTGTTTAATGGTAATTTGGTGGAGTTGGTGAGATCTTCCTCTGATACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTTAATACCCGGAGACTTGTTCGCCGACAGAAGAGGATGCTCAGTCGACTGCAAACATTGTTTGGTTGGAGCATACACTTTGTTGATTCCACAGCACCAATATCAAGCAAATCAGAAGATGTATGGGCACGCCAAGTAGTTGAATCTGCTGTGGAGATAGTTAAATCTTTCTTGAGTGGGAACGGAAGCTTCTCATCCACCTTTGGGACTTCAAATGACACAGGGATGAAAATAATCCAAAGGGACCTCTGGACTCAATACGTATGCAAGGCGTGCGGAGATCGGGTTCTTAGAGGATTACATGAATGGGAACAACACAGACAAGGTCGTGGGCACCGAAAACGTATTTCAAGTCTTAAGAGCAAGGACCAATTTCCTGGTTTCGTGGAACAGAAGGTGGAATATTCTCGGTGTGAACAGTGA 1980 0.4379 MATPKQSYEQHQQQTNVQRVRNSGMINVNQSPMRDDKEEEMSRSALAMFRAKEEEIERKKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAMVRKKIDSVNKELKPLGQTCQRKEREYKEALDAFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNALEEERRVKERLTMASERTVTSNSTGGERPKVVVIMGPTASGKSKLAVDLASHFPVEVINADSMQVYRGLDVLSNKLPLSHQNGVPHHLLGTVSPNVEFTAKAFRDSAIPIIDDILARNRLPVVVGGTNYYIQALVSPFLLVDSAEDMDESCLGDPPGITQPENSFPTENDGSSYGYDLLKDIDPVAANRIHPNNHRKINQYISLYTRTGVPPSKVFQGKAAENWGQVDNLRYDCCFVCVDASLPVLDRYVEQRVDCMMEDGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCVVKDMYERERELTEGSSIEKGKTLFNGNLVELVRSSSDTESTILLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWSIHFVDSTAPISSKSEDVWARQVVESAVEIVKSFLSGNGSFSSTFGTSNDTGMKIIQRDLWTQYVCKACGDRVLRGLHEWEQHRQGRGHRKRISSLKSKDQFPGFVEQKVEYSRCEQ 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01003 659 Pfam Transcriptional activator 21 169 IPR007033 -
Phco9g01003 659 Gene3D Classic Zinc Finger 601 647 - -
Phco9g01003 659 Pfam IPP transferase 234 531 - -
Phco9g01003 659 Coils Coil 120 140 - -
Phco9g01003 659 Coils Coil 67 87 - -
Phco9g01003 659 MobiDBLite consensus disorder prediction 178 198 - -
Phco9g01003 659 Gene3D - 199 599 IPR027417 -
Phco9g01003 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 443 IPR027417 -
Phco9g01003 659 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 199 577 IPR039657 -
Phco9g01003 659 MobiDBLite consensus disorder prediction 1 43 - -
Phco9g01003 659 Gene3D - 330 389 - -
Phco9g01003 659 Hamap tRNA dimethylallyltransferase [miaA]. 201 571 IPR018022 GO:0008033
Phco9g01003 659 FunFam tRNA dimethylallyltransferase 601 644 - -
Phco9g01003 659 MobiDBLite consensus disorder prediction 1 30 - -
Phco9g01003 659 Coils Coil 153 180 - -
Phco9g01003 659 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 201 474 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01003 Phco-Chr9 8455378 8462130 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01003 9 8455378 8462130 Phco9g01003 9 8455378 8462130 ECH
Phco2g02156 2 52270867 52273350 Phco9g01003 9 8455378 8462130 ECH