LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco9g01002	ATGGACATTGAGAACAACGAATCTCCTTGTTCCACTTCACTATCTCCACCAAACCCTAATCCACTGTGTCATTCTCCAAATCTACAACCCAACAATGCTAATCCATCTCACAAGAGGAAAGCAGGTAGAAAGAAGTTTAGGGAGACAAGGCACCCTGTGTATAGGGGTGTACGCCAAAGAAACGGCAACAAATGGGTCTGTGAAATTAGGGAACCGATAAAAAAATCAAGGATTTGGGTAGGCACATACCCTACTCCTGAAATGGCTGCTAGGGCACATGACGTGGCTGTCTTAGCCCTTAATGGCATCTCTGCTAACTTCAATTTCCCGGATTCAGTTTCCCTTCTCCCCCTTGCAAAGTCTCGTTCTGCTCTAGATATAAGGCAAGCAGCAAAAGCTACTACTCTTGATCATGCTTTCATGCCAAACACTGCTTTTTCTTCTTCCTCTCATGGCAATTCTAATTTTGAAGAAAATGAGAATGGTGAAGACAGTTGTTTGAGCATCAGCATGCAGAATGATGAGTCTGAAACAGTGTTCTTTGATGAGGAGGCAGTGTATAATATGCCAGGTCTGTTGGATAGTATGGCAGAGGGTTTGCTAATTACCCCACCCTCTACCAAAACAGCTCTGGACTGGGATCATATAGGTTCTGAAATAGACCTTACTCTGTGGAATATCTAG	684	0.4357	MDIENNESPCSTSLSPPNPNPLCHSPNLQPNNANPSHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEIREPIKKSRIWVGTYPTPEMAARAHDVAVLALNGISANFNFPDSVSLLPLAKSRSALDIRQAAKATTLDHAFMPNTAFSSSSHGNSNFEENENGEDSCLSISMQNDESETVFFDEEAVYNMPGLLDSMAEGLLITPPSTKTALDWDHIGSEIDLTLWNI	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco9g01002	227	CDD	AP2	54	112	IPR001471	GO:0003700\|GO:0006355
	Phco9g01002	227	SUPERFAMILY	DNA-binding domain	53	112	IPR016177	GO:0003677
	Phco9g01002	227	MobiDBLite	consensus disorder prediction	37	51	-	-
	Phco9g01002	227	ProSiteProfiles	AP2/ERF domain profile.	53	110	IPR001471	GO:0003700\|GO:0006355
	Phco9g01002	227	Pfam	AP2 domain	52	102	IPR001471	GO:0003700\|GO:0006355
	Phco9g01002	227	PRINTS	Ethylene responsive element binding protein signature	54	65	IPR001471	GO:0003700\|GO:0006355
	Phco9g01002	227	PRINTS	Ethylene responsive element binding protein signature	76	92	IPR001471	GO:0003700\|GO:0006355
	Phco9g01002	227	Gene3D	AP2/ERF domain	53	111	IPR036955	GO:0003700\|GO:0006355
	Phco9g01002	227	SMART	rav1_2	53	116	IPR001471	GO:0003700\|GO:0006355
	Phco9g01002	227	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	27	226	IPR045277	GO:0003700
	Phco9g01002	227	MobiDBLite	consensus disorder prediction	1	51	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco9g01002	Phco-Chr9	8438887	8439570	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco9g01002		AP2	3.8e-13	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco9g01002	9	8438887	8439570	Phco9g01002	9	8438887	8439570	ECH
	Phco10g01425	10	36917088	36917831	Phco9g01002	9	8438887	8439570	PCT