Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01425 ATGGATGTAACCATGAACAAAGTTGAGACCGAATGTTCTTATTACTACTCTATCTCTTCATCACCATCACCCACTTCTTCTCAAAGCCAACTCTGCAACCCCAAATCTCCTTCGGACAATTCATCATTTCATGCACAAGCAGCAAAACCAGCGTTGAGTTCTCACAAGAGGAAAGCTGGGAGAAAAAAGTTTCGCGAGACACGGCATCCAGTGTATAGAGGAGTTCGTCAGAGAAACGGTGACAGATGGGTGTGTGAAGTTCGTGAACCCAACAAGAAATCAAGGATATGGCTTGGAACATACTCCACGGCAGAAATGGCAGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAAGGGCACCTCTGCGGTGTTGAATTTCCCCGATTCGGTTTCTCTTCTTCCAGTTGCTAATTCTTCTTCAGCTGCAGATATTAGAGTAGCTGCAGCAAAAATTTCCGAGGTTTTTCTACCACCCAACCCTTCTTCATCCTCTACAAATGATTCGAGGGTTGAAATTGAAACTAACCCTTGTTCAGTGGAGGGTGTTGTTGATTTTGCGAAGACTGTGAACAATGATGACGGGTCCAACAAATCAGTGTTTTTTGATGAAGAGGCGATGTATAACATGCCAGGTTTGTTAGATAGTATGGCAGAAGGTCTTCTTATTACTCCACCTTCTATGAAGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGATCTCACTCTCTGGACTTATTAA 744 0.4382 MDVTMNKVETECSYYYSISSSPSPTSSQSQLCNPKSPSDNSSFHAQAAKPALSSHKRKAGRKKFRETRHPVYRGVRQRNGDRWVCEVREPNKKSRIWLGTYSTAEMAARAHDVAVLALKGTSAVLNFPDSVSLLPVANSSSAADIRVAAAKISEVFLPPNPSSSSTNDSRVEIETNPCSVEGVVDFAKTVNNDDGSNKSVFFDEEAMYNMPGLLDSMAEGLLITPPSMKRFDWDEVDCETDLTLWTY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01425 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 21 247 IPR045277 GO:0003700
Phco10g01425 247 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Phco10g01425 247 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Phco10g01425 247 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Phco10g01425 247 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Phco10g01425 247 MobiDBLite consensus disorder prediction 19 67 - -
Phco10g01425 247 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Phco10g01425 247 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Phco10g01425 247 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Phco10g01425 247 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Phco10g01425 247 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Phco10g01425 247 MobiDBLite consensus disorder prediction 19 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01425 Phco-Chr10 36917088 36917831 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco10g01425 AP2 1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01425 10 36917088 36917831 Phco10g01425 10 36917088 36917831 ECH
Phco10g01425 10 36917088 36917831 Phco9g01002 9 8438887 8439570 PCT