Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00928 ATGAATTCTGCAATGCATAGATCCGGGTACTGTAGCGATGGAACATACCGGTCTCAAAGGCCTTCCCTGGTGCTCCCAAACAACACCAATCTCTCACTCGTTTCGTTTCTCTTCCAAAGCGTTTCTTCTTTTCCATCCAAAACCGCTCTCGTTGACGCCGACTCTTCTCAAACCCTCTCCTTCGCGCAGCTAAAAGCCCAAGTCGCAAGCCTCGCCCATGGTTTTCTCAAACTAGGCATAAAGAAAAACGACGTCATCCTCCTCCTCGCTCCCAACACCATCCACTTCCCCGTCTGCTTCCTCGCCGCCACCGCCATCGGAGCCATCGTCTCCACCGCCAACCCCATTTACACCGTCCATGAACTCTCCAACCAAGTCAAAGATTCCAACCCCAAGCTCTTGATCACTGTCCCTGAACTATGGGACAAAGCAAAGAACCTCAACCTCCCCGCCGTCATTCTCAGCACCAACAACCTTCCGAACCCAACTAAAAACGTGTCACCGAAAATCACGAGTCTGGAAGCGGTGATGGAGATGGCGGGGCCGGTGACGGAGCTTCCGGAGAGCGGCGTTAAGCAGGGGGACACGGCGGCGCTGCTGTACTCCTCGGGGACCACGGGGATGAGCAAAGGCGTGGTCCTGACGCATGGGAACTTCATCGCGGCGTCAGTGATGATCAGCATGGACGACGACCTGGCCGGGGAGGTAAACGACGTGTTCCTCTGTGTTTTGCCGATGTTCCACGTGTTCGGGCTGGCGGTTGTGACGTACACGGCGCTGCGGCGAGGGAGCGCGGTGGTGTCGATGGGGAAGTTCGAGCTGGAGGCGTTTCTAAATGCGATTGAGAAGCATAGAGTGACGAAGTTGTGGTTGGTGCCTCCAATCCTGCTTGCTATGGCGAAACAGAGTGTGGTCGAGAACTATGATCTGTCTTCGTTGAAGCGTATAGGTTCCGGTGCTGCTCCTTTAGGGAAAGACTTAATGCAAGAATGTGGCAGGCGTTTTCCTCATGTCGCCATTTGTCAGGGCTATGGAATGACAGAGACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGATTCGTCATACTGGGTCGACGGGGATGCTGGCTTCGGGAGTGGAAGCTCAAATAGTGACTGTGGATACACAAAAGCCTCTCCCTCCTACACAGTCCGGGGAAATATGGGTGCGAGGTCCTAACATGATGAAAGGTTATCACAACAATCCACAGGCCACGAGATTGACTATAGATGAAAAGGGGTGGGTGCATACAGGAGATGTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTAATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAACTTGAAGGCCTTCTCGTTTCTCACCCTGAAATACTAGACGCTGTTGTTGTCCCATATCCCGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCGCTGACTGAAGAAGAAATTAAGAAGTTTATTGCTAATCAGGTTGCACCATTCAAAAAATTGAGAAGGGTGACATTCATAAGTAGTGTTCCAAGGACATCTTCAGGAAAAATTCTTAGAAGAGAGATCACTGCGAAAGCACGATCCAAAATATAA 1647 0.507 MNSAMHRSGYCSDGTYRSQRPSLVLPNNTNLSLVSFLFQSVSSFPSKTALVDADSSQTLSFAQLKAQVASLAHGFLKLGIKKNDVILLLAPNTIHFPVCFLAATAIGAIVSTANPIYTVHELSNQVKDSNPKLLITVPELWDKAKNLNLPAVILSTNNLPNPTKNVSPKITSLEAVMEMAGPVTELPESGVKQGDTAALLYSSGTTGMSKGVVLTHGNFIAASVMISMDDDLAGEVNDVFLCVLPMFHVFGLAVVTYTALRRGSAVVSMGKFELEAFLNAIEKHRVTKLWLVPPILLAMAKQSVVENYDLSSLKRIGSGAAPLGKDLMQECGRRFPHVAICQGYGMTETCGIVSVENPRVGIRHTGSTGMLASGVEAQIVTVDTQKPLPPTQSGEIWVRGPNMMKGYHNNPQATRLTIDEKGWVHTGDVGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIKKFIANQVAPFKKLRRVTFISSVPRTSSGKILRREITAKARSKI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00928 548 CDD 4CL 25 539 - -
Phco9g00928 548 Gene3D - 14 445 IPR042099 -
Phco9g00928 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 541 - -
Phco9g00928 548 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 445 - -
Phco9g00928 548 Pfam AMP-binding enzyme 39 450 IPR000873 -
Phco9g00928 548 Gene3D - 446 547 IPR045851 -
Phco9g00928 548 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Phco9g00928 548 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Phco9g00928 548 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Phco9g00928 548 SUPERFAMILY Acetyl-CoA synthetase-like 22 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00928 Phco-Chr9 7406764 7409962 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01479 10 37471868 37476002 Phco9g00928 9 7406764 7409962 PCT