Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00889 ATGGCTTCTGATTGTTCAAGATTTGTAAGATTTCAAGATGACCCTGAATTGGTAAAATTGCCAACAAACAGTGGCAAGGGAATCAGGCGCAATGGAACACGATTAGTTGAGACAAGGGGTAAAAAGGGTCTGAAGGAGACAAGGAAGTTCTTGAAGGGTAGAGTATTGTCAAGAGTATTCTCAGAGGATTATGAGAGAGTTAGAAAAAAAACATTATTAGATCCCCGGGGACAAACCATTCACCGATGGAACAAAATTTTCTTGGTAGCGTGTTTAGTTTCTTTATTTGTGGACCCTCTATTCTTTTATTTGCCACTAGTTCGAGATGAAGTGTGCATTGATATTGGAACAGCTCTTGAAGTTTTCCTCACAATGATAAGATCATTGGCAGATGTGTTTTACATGATTCAGATTCTCATGAAGTTTCGAACAGCTTATGTTGCTCCTTCTTCTCGTGTATTTGGGAGGGGAGAACTTGTCATAGACACTACCAAGATAGCTACTAGGTACCTGAGAAAGGGTTTGGGGCTAGACTTCATTGCTGCATTGCCTCTTCCTCAGGTGTTAATTTGGATTGTGATCCCCTATCTTGGAGGTTCAACCATGGCAAACACAAAGAACGTGCTTCGCTTTATCATCATTTTCCAATATTTACCAAGGCTGTTTCTGATTTTTCCACTTTCATCCCAAATTGTAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCCGTTTACAACTTGGTTCTGTACATGTTGGCTAGCCATTTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAACGACAAGAAGCGTGCTGGAGAAGTGTCTGCGATATGGAGACATCTTGCCAATATGGATTCTTTGACTGCAAAAGAGTTGAAGACTCCCTCAGGGTCTCCTGGTTTATAGCAAGTAATATCACAATTTTATGCTCACCAAAGACTAACTTTTATCAGTTTGGTATATACGGTGATGCTGTGACATCCCAAGTTACTATCTCATCATTCTTTCACAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATCTGAGTTCATTGGGACAAGGTCTTCTTACTAGCACTTTTGTCGGAGAAATAATGTTTGCCATTGTTGTTGCAACCCTTGGACTAGTTCTTTTTGCATTGCTTATTGGCAATATGCAGACATATCTCCAATCAACAACTGTTCGCTTAGAAGAGTGGAGGGTGAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTACCCCCAGAACTTAGACAATCGGTGCGCAAATATAACCAATATAAATGGCTGGCCACACGAGGGGTAGATGAAGAAGCTCTTCTCAAAGGACTTCCTGCTGATCTTCGGAGGGACATCAAGCGCCACCTTTGTCTCGAACTAGTTCGACGAGTGCCACTGTTCGATCAAATGGACGAGAGAATGCTTGATGCAATATGCGAGAGGCTGAAGCCGGCACTGTGCACGGAGAACACATACCTAGTTCGCGAGGGCGATCCCGTGAACGAAACTCTCTTCATAATCAGAGGCCACCTGGATTCCTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCGTGCCGCATAGGCCCCGGCGATTTCTGCGGCGAGGAGCTGCTCACATGGGCCCTGGGCCCACGGCCCAGCTTCATCCTCCCCTCCTCCACTCGAACCGTCAAGGCCATCTCCGAAGTGGAGGCCTTCGCCCTCATAGCCGAAGACCTCAAGTTCGTGGCGTCACAGTTCAGAAGACTACACAGCAAACAACTGAGACACAAGTTCAGGTTTTACTCGCACCAGTGGAGAACGTGGGCTGCATGTTTCATACAAGCTGCATGGAGACGCTATAAGAAGCGAAAGGAAGCTGCAGAACTGAGAGCTTTGAGCTACGTTCAGTCTAAGAGAGAGGGTGAGAGCGTAGGGTTGGTTGTGTATGGTACGAGGATGACTAGGAAGGGTACTGTGCATTCTGATGAAGTTGTCAACTCTTTGCAGAAGCCAGAAGAACCAGACTTTTCTGTTGGTGAGTGA 2055 0.4555 MASDCSRFVRFQDDPELVKLPTNSGKGIRRNGTRLVETRGKKGLKETRKFLKGRVLSRVFSEDYERVRKKTLLDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGTALEVFLTMIRSLADVFYMIQILMKFRTAYVAPSSRVFGRGELVIDTTKIATRYLRKGLGLDFIAALPLPQVLIWIVIPYLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAVYNLVLYMLASHFLGASWYLLSIERQEACWRSVCDMETSCQYGFFDCKRVEDSLRVSWFIASNITILCSPKTNFYQFGIYGDAVTSQVTISSFFHKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPPELRQSVRKYNQYKWLATRGVDEEALLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTENTYLVREGDPVNETLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALGPRPSFILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRALSYVQSKREGESVGLVVYGTRMTRKGTVHSDEVVNSLQKPEEPDFSVGE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00889 684 ProSiteProfiles cAMP/cGMP binding motif profile. 474 571 IPR000595 -
Phco9g00889 684 FunFam Cyclic nucleotide-gated ion channel 1 401 465 - -
Phco9g00889 684 SUPERFAMILY Voltage-gated potassium channels 74 396 - -
Phco9g00889 684 Gene3D - 86 398 - -
Phco9g00889 684 SUPERFAMILY cAMP-binding domain-like 404 600 IPR018490 -
Phco9g00889 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 680 - -
Phco9g00889 684 SMART cnmp_10 474 605 IPR000595 -
Phco9g00889 684 CDD CAP_ED 474 605 IPR000595 -
Phco9g00889 684 Gene3D Helix hairpin bin 401 465 - -
Phco9g00889 684 FunFam Cyclic nucleotide-gated ion channel 1 472 590 - -
Phco9g00889 684 PRINTS EAG/ELK/ERG potassium channel family signature 255 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco9g00889 684 PRINTS EAG/ELK/ERG potassium channel family signature 343 360 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco9g00889 684 PRINTS EAG/ELK/ERG potassium channel family signature 437 444 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco9g00889 684 PRINTS EAG/ELK/ERG potassium channel family signature 369 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco9g00889 684 PRINTS EAG/ELK/ERG potassium channel family signature 387 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco9g00889 684 PRINTS EAG/ELK/ERG potassium channel family signature 138 147 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco9g00889 684 Gene3D Jelly Rolls 472 592 IPR014710 -
Phco9g00889 684 Pfam Ion transport protein 83 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00889 Phco-Chr9 6963752 6967902 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01503 10 37826958 37830079 Phco9g00889 9 6963752 6967902 PCT