Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01503 ATGGCTTTTGGTAATTCGAGATCTGCAAGGTTTGAAGATGATCCGGAGCTAGCTAAGTTTCCTGCAAGTAATGGTGACAACGGTTTCAAGATCAAATACCACATTGATGGGAAACAAATACCTGAGCCTAGTTCCAAAATGGCTAAGAAAAAGGTGACGGGGAAGTTCTTGAAAGCTAGAATGTTGTCAAGAGTGTTCTCAGAAGACTATGACAGAGTCAAACGAAGAGTGTTAGATCCTAGGGGACACGCCATACACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTGTCTTTGTTTGTGGACCCTTTGTTCTTTTATCTGCCAGTGGTTCGAGATGAAGTGTGCATTGATATTGGAATAACTCTTGAGGTTATCCTCACTTTGGTAAGATCAGTGGGGGATGTCTTCTACGTGATTCAGATTTTCTTGAAGTTTCGTACGGCTTTTGTTGCTCCTTCTTCAAGGGTTTTTGGGAGAGGAGAACTTGTTGTAGGATATTCTAAGATTGCAGTTAGGTACCTTCGCAAGAGTTTCTGGTTAGACTTTGTTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTATTATCCCAACTCTTAGGGGTTCAACCATGGGCAACACAAAAAATGTCCTTCGCTTCTTTATCGTTTTCCAATATTTTCCGAGGCTGGTTTTGATTTTTCCACTCTCATCACAAATTGTAAAAGCTACAGGGGTGGTGACAGAAACAGCGTGGGCAGGGGCTGCTTACAACCTAATGCTTTACATGTTGGCTAGCCATGTTTTAGGGGCTTGCTGGTATCTTCTATCAATCGAACGACAAGAAGCATGTTGGAGAAGTGTATGCGATTTGGAGAAGTCATTTTGTGAATATGGATTCTTTGACTGCCGCAGGATTAAAGAGGCCCACAGGGTGTCCTGGTTTATAGCAAGTAATATCACAAATTTATGCTCACCAAATGCAAAACATGACTTCTATCAGTTTGGTATATACGCTGATGCCGTGACTTCCGAAGTTACATCCTCAGCATTCTTCAACAAATACTTTTTTTGCCTGTGGTGGGGTCTAAGGAATTTGAGTTCGTTGGGACAAGGGCTTCTTACCAGCACATATGTTGGAGAGATAATGGTCGCCATTGTTATTGCAACTCTTGGATTGGTTCTTTTTGCGTTGCTAATTGGTAATATGCAGACATATCTGCAATCAACCACTGTTCGATTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGACAACTACCTCCAGAACTAAGAGAATCTGTGCGTAAATACGACCAATACAAATGGCTGGCCACAAGAGGAGTGGATGAAGAATCTCTTCTCAAAGGACTCCCCGTGGATCTTCAGAGAGACATCAAACGCCACCTTTGTCTCGATCTAGTTCGAGGAGTGCCCTTATTTGATCAAATGGATGAGAGAATGTTGGATGCAATCTGTGAAAGGCTGAAGCCAGCACTGGGCACAGAGGGCACGTTCCTTGTGCGCGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATCCGAGGCCATCTTGATTCCTACACCACGAACGGGGGCAGGGCCGGGTTCTTCAACTCGTGCCGTATTGGGCCGGGTGAGTTCTGCGGCGAGGAGCTTCTAACTTGGGCCTTGGATCCAGGGCCCAGTGTGATCCTCCCTTCGTCCACTCGAACAGTGAAAGCCATCTCGGAAGTGGAGGCCTTTGCACTGATAGCGGAAGACCTGAAATTCGTGGCGTCACAGTTCAGAAGACTGCACAGCAAACAACTGAGACACAAATTCAGGTTTTATTCGTACCAGTGGAGAACCTGGGCTGCGTGTTTCGTTCAAGCCGCGTGGAGAAGGCATAAGAAAAGGAAGGAAGTTGCTGAACTAAGGGCCAGGGCCATTAACAATGCTGATCCTGGGACACCAACGTACGCCAAAAAGGTCGCCAAGAGTAGTACTAGGAAAATTGTTCATGTCTCTTCTCCCACAGATTCTGGAGTTGTCTCCTCTTTGCCAAAGCCAGCAGAACCAGATTTCACTGTTGATGAACGATATTGA 2094 0.4522 MAFGNSRSARFEDDPELAKFPASNGDNGFKIKYHIDGKQIPEPSSKMAKKKVTGKFLKARMLSRVFSEDYDRVKRRVLDPRGHAIHRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGITLEVILTLVRSVGDVFYVIQIFLKFRTAFVAPSSRVFGRGELVVGYSKIAVRYLRKSFWLDFVAALPLPQVLIWIIIPTLRGSTMGNTKNVLRFFIVFQYFPRLVLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWRSVCDLEKSFCEYGFFDCRRIKEAHRVSWFIASNITNLCSPNAKHDFYQFGIYADAVTSEVTSSAFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMVAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWLATRGVDEESLLKGLPVDLQRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALGTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGEFCGEELLTWALDPGPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSYQWRTWAACFVQAAWRRHKKRKEVAELRARAINNADPGTPTYAKKVAKSSTRKIVHVSSPTDSGVVSSLPKPAEPDFTVDERY 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01503 697 SUPERFAMILY Voltage-gated potassium channels 79 404 - -
Phco10g01503 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 691 - -
Phco10g01503 697 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Phco10g01503 697 Gene3D Helix hairpin bin 409 473 - -
Phco10g01503 697 MobiDBLite consensus disorder prediction 672 697 - -
Phco10g01503 697 PRINTS EAG/ELK/ERG potassium channel family signature 395 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco10g01503 697 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco10g01503 697 PRINTS EAG/ELK/ERG potassium channel family signature 445 452 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco10g01503 697 PRINTS EAG/ELK/ERG potassium channel family signature 351 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco10g01503 697 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco10g01503 697 Gene3D - 90 406 - -
Phco10g01503 697 CDD CAP_ED 482 613 IPR000595 -
Phco10g01503 697 ProSiteProfiles cAMP/cGMP binding motif profile. 482 586 IPR000595 -
Phco10g01503 697 Pfam Ion transport protein 88 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phco10g01503 697 SUPERFAMILY cAMP-binding domain-like 412 608 IPR018490 -
Phco10g01503 697 Gene3D Jelly Rolls 480 600 IPR014710 -
Phco10g01503 697 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Phco10g01503 697 SMART cnmp_10 482 613 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01503 Phco-Chr10 37826958 37830079 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01503 10 37826958 37830079 Phco10g01503 10 37826958 37830079 ECH
Phco10g01503 10 37826958 37830079 Phco9g00889 9 6963752 6967902 PCT