Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00866 ATGAAGTGTGTGAGTGGCAGCAGATCAGAGGGAAAGTTCTTTTGCTACAGAAAAATGAATGCAGAGGAAAAGCCTGTGAATGAGGAACATGACGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCTCGCATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTAGAAATACCCTCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAATTCTAATCCTAATCCTACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCTACACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAACCATAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGAACGCCAGCAGCAGATGTTGAAAAGGCAAATACTGCAGCTCCAGAACTTTCCTCTTCAGGCATTGTAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCACTAGATGAAATTAGACAATCAAACAACGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGATAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATAGTTCCTTCCACTCCTCGAGGAAAGGAAAGAGATGAATTGGTAGACACTTCAACAAATGATACTGAAAATCAAGATGCTAGTGGTGAAGATATAGCCGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTCTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAGTAGGTCTCAGCTGGAAGATGCAACCGGATACAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTTGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGCACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCGTCAACCATGGTAAAAAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATTTTTTACTCCATGGTTCATGTGCAAGCCGTTTTGTCTATCCTTCTAGCCACATTTGCGGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTATAGATGGAGAAGAAGATTGCAAGCTTTATCAGAGCAGCGACAAGGCCCTCAATTGATCCCACAAACAGGACAAAATCCACGATCTTCAAACACTCCTCATTCAGATTCAGGTTCAGGTCCTTCAAACCACAGTCAACCAGTGGTGCAAACTGAACAGAACTCAAATCAGAGTTGA 1611 0.4295 MKCVSGSRSEGKFFCYRKMNAEEKPVNEEHDAGSCRRTVSLPVQKVDDPMGITEETSHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPNSNPNPTPTPKRVNFLVSSRSVDPPTHNSPGPSTSRGKSTIRSLLPKLSFRYRTPAADVEKANTAAPELSSSGIVEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRGKERDELVDTSTNDTENQDASGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGASRSQLEDATGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSMVHVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQALSEQRQGPQLIPQTGQNPRSSNTPHSDSGSGPSNHSQPVVQTEQNSNQS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00866 536 ProSiteProfiles Zinc finger RING-CH-type profile. 276 338 IPR011016 GO:0008270
Phco9g00866 536 Pfam RING-variant domain 284 331 IPR011016 GO:0008270
Phco9g00866 536 SUPERFAMILY RING/U-box 280 335 - -
Phco9g00866 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 339 IPR013083 -
Phco9g00866 536 MobiDBLite consensus disorder prediction 85 104 - -
Phco9g00866 536 MobiDBLite consensus disorder prediction 110 131 - -
Phco9g00866 536 PANTHER OS02G0165000 PROTEIN 38 496 - -
Phco9g00866 536 MobiDBLite consensus disorder prediction 490 536 - -
Phco9g00866 536 MobiDBLite consensus disorder prediction 192 208 - -
Phco9g00866 536 MobiDBLite consensus disorder prediction 191 231 - -
Phco9g00866 536 MobiDBLite consensus disorder prediction 247 275 - -
Phco9g00866 536 CDD RING_CH-C4HC3_MARCH 284 332 - -
Phco9g00866 536 SMART ringv_2 283 332 IPR011016 GO:0008270
Phco9g00866 536 MobiDBLite consensus disorder prediction 24 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00866 Phco-Chr9 6719197 6724718 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01527 10 38062949 38066579 Phco9g00866 9 6719197 6724718 PCT