Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01527 ATGAGTGCTCAACAAAAAGAAACGGAAAAACATGACACGCTTTCGTCGAATCCAACGGTGGATGATACAATGGGGGTAATCGATGAAACCTCGGATGTAAACAATGAATGGAAGCCAGAGAAAATTCAGTTCGAAATACCGACCAGAACATCAGAAGAGTCTTGTCGGGATTTTGTTGGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCATAAGAGAGTGAATTTTCTTGTCACTTCTCGCTCTGTTGATGCTCCTAGACCTTCTTCTTCTTCAGCTCCCAGAGGCAAATCATCCATGAGAAACATCTTACCAAGATTCGGCTTCAGGAATCGTCAATCGCTTGATGTTGAAAAGGCTGTTACCGCAGCTTCAGAAGCTTCTTTTTCTGGTCATCAAGAAAAGTCCTCAATCTCCAGATCAGTGTCTCTCACCAAGATATTCACTCATAAGATTAACAGAACGTCTTCGTTACCGGTTGAAGAAATTGGGCGTGCAAACGCAGAATCTGCTCTGGGTGGAGCTCTTGGTGCTTCTCCATGCGGAAGAGAAACCCAGGGAATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAAGGCATAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCACATACATGAAGTGAATGAATCAACAAAGGATACTGAAAATGGTGGTGGTGAAGATATCGGTGAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGCAAGGTCTGAGCAGGGAGATGAATACAGGGTTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGAGAACCAAGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGACTACTCTCCTCCGTGACGTCAACGACCATGGTGACGAACAGGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCCCATATATTTTACCCCCTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCTGGCTTTGGCGTGGTGATGAGCGGAAGTTCAATTGTTTTGGAGTTTTCTAGATGGAGAAGAAGATGGCTAGCTTTATCAGAGCAGCAGCATGGTTCTTCAGCGTGA 1374 0.4505 MSAQQKETEKHDTLSSNPTVDDTMGVIDETSDVNNEWKPEKIQFEIPTRTSEESCRDFVGIRMPLTPSPTPSHKRVNFLVTSRSVDAPRPSSSSAPRGKSSMRNILPRFGFRNRQSLDVEKAVTAASEASFSGHQEKSSISRSVSLTKIFTHKINRTSSLPVEEIGRANAESALGGALGASPCGRETQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPHIHEVNESTKDTENGGGEDIGEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGARSEQGDEYRVWQELPVLVIVSMLAYFCFLEQLLVGKMRTKAIFVSLPFSCVLGLLSSVTSTTMVTNRFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEFSRWRRRWLALSEQQHGSSA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01527 457 SUPERFAMILY RING/U-box 243 298 - -
Phco10g01527 457 CDD RING_CH-C4HC3_MARCH 247 295 - -
Phco10g01527 457 MobiDBLite consensus disorder prediction 82 100 - -
Phco10g01527 457 ProSiteProfiles Zinc finger RING-CH-type profile. 239 301 IPR011016 GO:0008270
Phco10g01527 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 302 IPR013083 -
Phco10g01527 457 PANTHER OS02G0165000 PROTEIN 5 455 - -
Phco10g01527 457 MobiDBLite consensus disorder prediction 82 104 - -
Phco10g01527 457 MobiDBLite consensus disorder prediction 1 16 - -
Phco10g01527 457 SMART ringv_2 246 295 IPR011016 GO:0008270
Phco10g01527 457 MobiDBLite consensus disorder prediction 1 25 - -
Phco10g01527 457 Pfam RING-variant domain 247 294 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01527 Phco-Chr10 38062949 38066579 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01527 10 38062949 38066579 Phco10g01527 10 38062949 38066579 ECH
Phco10g01527 10 38062949 38066579 Phco9g00866 9 6719197 6724718 PCT