Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00803 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGCGAATCGCCGTTACCGTTAGAGAAATTTCCTGAAGGTTCGCGGAACCAAATGGCAGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCGAGTAACGGCGGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAGTGACGTCGTAACGAAGGAGCTGTTTCCGGTGAGTGAAGGAGTGGCTACGTCGTCGTTTTCAGCGAGGAAAGGTTTCGTGGATCTCGCGTTCGGTCGTGAGGGAGGGAATAGTGAGATAAAGATGCTTCAGCCGCAACCTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTAACGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATTTTAAACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGTGGAGTTACTCTCCATAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACATATGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGTTGGCAATCAGAATCTTGATCTCAATTTGGGCATTGCAACCCAAGGACCTGGTCCCAAAGAAAATTGGGAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCGATGTTAATTCAGGAATTGGTAATCCATCTTTGAAAAGACTGGTTGTAAATGAAGATTGCCCTTCTGTAAGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACATGGATCATTCAAAAGGATTCCCCAACTGGGCTTGGCAAACACATGCCCAGGTGAATGCTACCCCAGTGCCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTGCAATCCCCAGAGTCTCTGTTTTACTTCATCCAGCGCGCATTCCAGCAATGCGTCCGAATATTATTACCAAGTTAAGCCCCCGCAGGCACCACTATAG 1455 0.4729 MLDLNLNAEWTDSARDGESPLPLEKFPEGSRNQMAESGTSNSSVVNADGSSNGGCDEDSCSTRADDVYTFNFDILKVEGASDVVTKELFPVSEGVATSSFSARKGFVDLAFGREGGNSEIKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVNADINFNLSDYEDDFKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEVGNQNLDLNLGIATQGPGPKENWEQLQFPSVHYNTHGGISSMMETDVNSGIGNPSLKRLVVNEDCPSVRNGMCPSFFPNEEKTERMNMDHSKGFPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNCNPQSLCFTSSSAHSSNASEYYYQVKPPQAPL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00803 484 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 SUPERFAMILY DNA-binding domain 239 298 IPR016177 GO:0003677
Phco9g00803 484 MobiDBLite consensus disorder prediction 1 59 - -
Phco9g00803 484 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 119 330 - -
Phco9g00803 484 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Phco9g00803 484 MobiDBLite consensus disorder prediction 119 149 - -
Phco9g00803 484 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 Pfam AP2 domain 239 289 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 MobiDBLite consensus disorder prediction 121 137 - -
Phco9g00803 484 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Phco9g00803 484 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Phco9g00803 484 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Phco9g00803 484 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Phco9g00803 484 MobiDBLite consensus disorder prediction 32 58 - -
Phco9g00803 484 FunFam AP2-like ethylene-responsive transcription factor 239 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00803 Phco-Chr9 6137181 6140584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco9g00803 AP2 2.9e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01561 10 38402102 38405858 Phco9g00803 9 6137181 6140584 PCT