Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01561 ATGTTGGATCTTAATCTGAATGCCGACTCGACTCAGAGCCACGACTCGGTGATGCTGTTGGACAAGTTTCCCGAAGCTTCTTCGGTAACTTCGAATTCCTCCGTGGTGAATGCGGAAGGGTCTAGCAACGAGGACTCGTGCTCGACACGCGCCGGTGGCGTGTTCACCTTCAATTTCGGAATTCTTAAGGTCGAAGGCGCGGACGACGTCGTCGTCACCGCGGCGAAGGAGCTATTTCCGGTGACCGCGGATAATTGGCAAGGGCAGAGTTCGACGTCGTCGTTTCAGGCTAGGAAGAGTTTGATGGATCTCTCGCTGGATCGTCAAAACGGCGAGGTGAAGGTGTTTCAGGTTCAGCAACAACCTCAGGTGAAGAAGAGTAGGAGGGGTCCACGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACCGAAGGACGGGAAGATGGGAATCGCACATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCCGCAGCTAGGGCCTATGATCGAGCTGCAATTAAGTTCAGGGGACTTGATGCTGATATCAATTTTAATCTTGTTGATTATGAGGAGGATCTAAAACAGATGAAAAATCTTTCAAAGGAGGAGTTCGTCCACATACTCCGCCGTCACAGTACCGGTTTCTCAAGGGGTAGTTCAAAATTCAGGGGAGTGACTCTCCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGAAAAAAGTATATATATCTTGGGCTTTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGGGAGGCAGTGACTAACTTCGAGCCAAGTGCATATGAGAGCGAAATGAAACCTGAAGCTATTAATGAAGGTGGCAGTCACGATCTTGATCTCAATCTGGGCATAGCGACTCCAGGACATGGTCCCAAAGAAAATCTGGGCCATCTTCACTTCCAGCAAGTCCCTTACAGCACGCACCCCGGAAGAATTTCAAGGATGGAGACTAATGTTAATTCAGTTATTGGTGATCCTTCTTTGAAAAGGCATATTGTAACTGAAGAGCGTCCTTCTGAATGGAATACCTCATATTCCACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATCGGCATAGATCCTTCAAAAGGAGTCCCCAACTGGGCGTGGCAAACACATAGCCAGGTTTCCGCCACCCCAGTACCATCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCCAACAAAATCATTGAACTCAATTCCGCAGAACCTCTGTTTCACTTCAGCCAGTGCACCAGGTAGCAATGCACCTCAATTCTATTACGAGGTCAAGCCCCTGCAGACACCATCCCAGCCTATCTAG 1428 0.4888 MLDLNLNADSTQSHDSVMLLDKFPEASSVTSNSSVVNAEGSSNEDSCSTRAGGVFTFNFGILKVEGADDVVVTAAKELFPVTADNWQGQSSTSSFQARKSLMDLSLDRQNGEVKVFQVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSTGFSRGSSKFRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSAYESEMKPEAINEGGSHDLDLNLGIATPGHGPKENLGHLHFQQVPYSTHPGRISRMETNVNSVIGDPSLKRHIVTEERPSEWNTSYSTFFPNLERAERIGIDPSKGVPNWAWQTHSQVSATPVPSFSTAASSGFSISATFPPNAIFPTKSLNSIPQNLCFTSASAPGSNAPQFYYEVKPLQTPSQPI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01561 475 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Phco10g01561 475 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
Phco10g01561 475 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Phco10g01561 475 CDD AP2 137 192 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 Pfam AP2 domain 228 278 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 MobiDBLite consensus disorder prediction 117 138 - -
Phco10g01561 475 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 FunFam AP2-like ethylene-responsive transcription factor 228 288 - -
Phco10g01561 475 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
Phco10g01561 475 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
Phco10g01561 475 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Phco10g01561 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 89 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01561 Phco-Chr10 38402102 38405858 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco10g01561 AP2 7.1e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01561 10 38402102 38405858 Phco10g01561 10 38402102 38405858 ECH
Phco10g01561 10 38402102 38405858 Phco9g00803 9 6137181 6140584 PCT