Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00619 ATGTCTCTGATACAACAACTCTCAAATCGATCACTGGTCGTTTCAGTTTCTCCTCCTTTGGGCATCATCATGTCTGAGAATACACGACCCTTTTGCAAAGTCACTCCCCCAAATCCCAACACACCCACTTCCTTTGTTGAAGCTTCCCACTCCAAAGTTCGCGTCTTTGTCAGGAGAAATAAAAAACCTAGAAAAATGGCTGTCAAACTTGAAGAAGAAGACCATCTTCCGTTAACCCAGGATCACAAGGTTCCGGTTACACCCAACTCAGCCACTTCCTTTACTGAAGCTTCCCGCTCCAAAGTTCGCGTCTTTGTCAGGAGAAATAAAAATCCCAGAAAAATGGCTGTCAAACTTGAAGAAGAAGACCATCTTCCCTCAACCCAGGATCACAAGGTTCCGGTTACACAGAAGTTGGGCCTTCCAGAAATTGAAGAATTTGCGTACTGTGGAGCAAATGAATTGACTCGGCGTAGGAAATCTGAAATGGAATCAGATGTGGCTTCAGTGGCAAGTGAAGTTGCTTCAACTAGACCTGGTGGTGAATCACCTGCCCACTGGGAAAAGGTGCTGGAGGGGATTCGCAAAATGAGGTGTTCTGCTGATGCACCAGTGGATACTATGGGATGTGAGAAAGCTGGTGATACACTACCTCCCAAGGAGAGAAGATTTGCTGTCCTAGTATCTTCCTTATTATCTAGCCAAACAAAGGATCCTGTTACTCATGGAGCAATTCAACGCCTTCTTCAAAATGATCTGCTTACCGCCGAAGCAATCAATAATGTTGACGAAGAGACCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTACCACGGAGACATACCTAGCTCAATTGACCAACTGCTGTTACTTCCAGGCATTGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGGCTTGGGTGGGTCTCAAGATTGGGCACAAAACAGAAAACTTCAACACCTGAAGAGACAAGAGAGTCACTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTCTTTTGGTAGGATTTGGACAAACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCAGTGTAAGAGACTTGTGTCCTTCAGCCTTCAAGGAGACCTCAAACTCAAGCCCATCTTCCAAGTCCAAAAAGCCCGGGCTGAATAAGAAGCCCTAA 1296 0.4444 MSLIQQLSNRSLVVSVSPPLGIIMSENTRPFCKVTPPNPNTPTSFVEASHSKVRVFVRRNKKPRKMAVKLEEEDHLPLTQDHKVPVTPNSATSFTEASRSKVRVFVRRNKNPRKMAVKLEEEDHLPSTQDHKVPVTQKLGLPEIEEFAYCGANELTRRRKSEMESDVASVASEVASTRPGGESPAHWEKVLEGIRKMRCSADAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQNDLLTAEAINNVDEETIKKLIYPVGFYTRKATNLKKIANICLMKYHGDIPSSIDQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETRESLQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSVRDLCPSAFKETSNSSPSSKSKKPGLNKKP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00619 431 CDD ENDO3c 224 386 IPR003265 GO:0006284
Phco9g00619 431 MobiDBLite consensus disorder prediction 409 424 - -
Phco9g00619 431 Gene3D Hypothetical protein; domain 2 210 321 - -
Phco9g00619 431 SMART ccc3 389 409 IPR003651 GO:0051539
Phco9g00619 431 FunFam Endonuclease III-like protein 1 219 323 - -
Phco9g00619 431 Pfam Helix-hairpin-helix motif 294 322 IPR000445 GO:0003677
Phco9g00619 431 Pfam HhH-GPD superfamily base excision DNA repair protein 228 369 IPR003265 GO:0006284
Phco9g00619 431 MobiDBLite consensus disorder prediction 409 431 - -
Phco9g00619 431 Hamap Endonuclease III-like protein 1 [NTHL1]. 183 412 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Phco9g00619 431 Gene3D - 322 412 IPR023170 -
Phco9g00619 431 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 109 423 - -
Phco9g00619 431 FunFam Endonuclease III homolog 322 412 - -
Phco9g00619 431 SUPERFAMILY DNA-glycosylase 195 419 IPR011257 GO:0003824|GO:0006281
Phco9g00619 431 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 390 406 IPR004035 -
Phco9g00619 431 SMART endo3end 232 388 IPR003265 GO:0006284
Phco9g00619 431 ProSitePatterns Endonuclease III family signature. 297 326 IPR004036 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00619 Phco-Chr9 4515152 4520457 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01732 10 39919041 39922478 Phco9g00619 9 4515152 4520457 PCT