Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00607 ATGGAGGCGGTGGAGCTGAAGCGCGTGTTCGAGATGTTCGATCGGAACGGGGATGGCCGAATATCGGTGGAGGAGCTGAGAGATTCGTTGGTGAATTTGGGGATAGAGATTCCCGAGAAGGAGCTGGCGGATATGATCCAGAGGATCGACGTCAACGGCGACGGCTGCGTGGATATGGAGGAGTTCGGGGAGCTCTACGAGTCGATAATGGAGGAGCGCGACGAGGAGGAGGACATGCGGGAGGCCTTTAACGTCTTCGATCAGAACCGCGATGGCTTCATCTCCGTGGACGAGCTCCGCGCCGTGCTGGCCTCCCTGGGCCTCCACCAAGGGAGGAGCCTGGAGGAGTGCCGGAAGATGATCGTGAAAGTGGACATTGACGGAGATGGCATGGTGAATTACAAGGAATTCAGGCAAATGATGAAGAGTGGAGGATTCTCTGGTCTTGGTTAA 453 0.5651 MEAVELKRVFEMFDRNGDGRISVEELRDSLVNLGIEIPEKELADMIQRIDVNGDGCVDMEEFGELYESIMEERDEEEDMREAFNVFDQNRDGFISVDELRAVLASLGLHQGRSLEECRKMIVKVDIDGDGMVNYKEFRQMMKSGGFSGLG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00607 150 Gene3D - 68 145 - -
Phco9g00607 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Phco9g00607 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Phco9g00607 150 FunFam Calmodulin 1 2 144 - -
Phco9g00607 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Phco9g00607 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Phco9g00607 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Phco9g00607 150 Gene3D - 3 67 - -
Phco9g00607 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Phco9g00607 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Phco9g00607 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Phco9g00607 150 PRINTS Parvalbumin signature 87 103 - -
Phco9g00607 150 PRINTS Parvalbumin signature 124 137 - -
Phco9g00607 150 PRINTS Parvalbumin signature 65 83 - -
Phco9g00607 150 SUPERFAMILY EF-hand 5 143 IPR011992 -
Phco9g00607 150 SMART efh_1 5 33 IPR002048 GO:0005509
Phco9g00607 150 SMART efh_1 78 106 IPR002048 GO:0005509
Phco9g00607 150 SMART efh_1 41 69 IPR002048 GO:0005509
Phco9g00607 150 SMART efh_1 116 144 IPR002048 GO:0005509
Phco9g00607 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Phco9g00607 150 CDD EFh 82 142 IPR002048 GO:0005509
Phco9g00607 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 142 - -
Phco9g00607 150 CDD EFh 5 62 IPR002048 GO:0005509
Phco9g00607 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00607 Phco-Chr9 4394673 4395125 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01737 10 39943877 39944530 Phco9g00607 9 4394673 4395125 PCT