Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01737 ATGCCAACTATTTTGCTCAGGTTTTTTCTTCTTTACAATCTCCTACACCCATTTCTCCTGTTTCTGGTTCCCAAGAAGGTGCGAGCCATCCTCTCCACTTCTTGGTTCTATTCCACCACCATCACCACACCACCACCACCTTCTTCTTCTTCTTCTACTACTTCTTCTTCCTCGAGGCTCATCACCAGAATTTCACCACCAATGGACCCCCACGAGCTGAAGCGCGTGTTTCAGATGTTCGACCGTAACGGTGACGGGAGAATCACGAAGAAGGAGCTGAATGACTCGTTGGAGAATCTGGGCATTTTCATTCCCGACAAGGAGCTTACCCTGATGATCGAGAGAATAGACGTTAATGGCGATGGGTGTGTCGACATCGATGAGTTCGGGGAGCTATACCAGAACATCATGGACGACCGTAACGAGGAGGAGGACATGCGAGAGGCCTTCAACGTCTTCGACCAGAACGGCGATGGCTACATCACTGTGGAAGAGTTGAGGACCGTTTTGTCCTCGCTAGGGTTGAAGCAGGGAAGAACGGTGGAGGATTGCAAGAAGATGATCATGAAGGTGGACGTTGATGGAGATGGAATGGTCGATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTGA 654 0.4954 MPTILLRFFLLYNLLHPFLLFLVPKKVRAILSTSWFYSTTITTPPPPSSSSSTTSSSSRLITRISPPMDPHELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELTLMIERIDVNGDGCVDIDEFGELYQNIMDDRNEEEDMREAFNVFDQNGDGYITVEELRTVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01737 217 FunFam Calmodulin-like protein 5 48 141 - -
Phco10g01737 217 SMART efh_1 108 136 IPR002048 GO:0005509
Phco10g01737 217 SMART efh_1 72 100 IPR002048 GO:0005509
Phco10g01737 217 SMART efh_1 183 211 IPR002048 GO:0005509
Phco10g01737 217 SMART efh_1 145 173 IPR002048 GO:0005509
Phco10g01737 217 Pfam EF-hand domain pair 143 209 IPR002048 GO:0005509
Phco10g01737 217 Pfam EF-hand domain pair 72 134 IPR002048 GO:0005509
Phco10g01737 217 SUPERFAMILY EF-hand 71 211 IPR011992 -
Phco10g01737 217 FunFam calmodulin-like protein 3 142 212 - -
Phco10g01737 217 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Phco10g01737 217 MobiDBLite consensus disorder prediction 41 64 - -
Phco10g01737 217 CDD EFh 145 209 IPR002048 GO:0005509
Phco10g01737 217 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Phco10g01737 217 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Phco10g01737 217 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Phco10g01737 217 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Phco10g01737 217 Gene3D - 138 211 - -
Phco10g01737 217 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 144 209 - -
Phco10g01737 217 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Phco10g01737 217 Gene3D - 46 137 - -
Phco10g01737 217 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Phco10g01737 217 MobiDBLite consensus disorder prediction 41 63 - -
Phco10g01737 217 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01737 Phco-Chr10 39943877 39944530 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01737 10 39943877 39944530 Phco10g01737 10 39943877 39944530 ECH
Phco10g01737 10 39943877 39944530 Phco9g00607 9 4394673 4395125 PCT