Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00486 ATGTGTGACATTATAGCTATGCCGTCCATACCTATTACAGATCGACCTGCTAAAGGTGGTGTTGAGATGGAATATTTAGAGGATGATAAGAAGACAAAGCTTGGCTCTTTAAAGAAGGTAGCAATCAGTGCATCTTCAAAGTTCAAGCATTCCTTGCAAAAGAAGGGGAGGAGGCATAGCAGGGTTATGTCTATTGCTATTGAGGATGAAGTTGATGCAGAAGAGTTACAAGCGGTTGATGCTTTTCGCCAAACACTCATCTTGGAAGAGCTATTACCCTCAAAACATGATGATCATCATATGATGTTAAGGTTCTTGAGAGCAAGAAAATATGACATTGAGAAAACAAAACAAATGTGGGCAGATATGCTTCTGTGGAGGAGGGAGTTTGGTGCTGACACAATTATGGAGGATTTTGAGTTTAAGGAGTTGCAAGAAGTTCGAAAATACTACCCACAAGGGAATCACGGAGTTGATAAACAAGGGCTACCTGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAACAAGCTGTTGCAGGTCACAACTTTGGATCGCTATCTTAAGTACCATGTGAGAGAATTTGAGAGGACATTCCTTGTTAAGTTCCCTGCTTGTTCCATCGCAGCCAAGAAACACATTGACCAAAGCACAACAATCTTGGATGTGCAAGGAGTGGGTCTCAAAAGTATGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTACCCTGAGACCCTAAATCGTATGTTCATCATTAATGCTGGTTCAGGATTTAGGCTGTTGTGGAACACTGTCAAGTCATTCCTTGATCCTAAGACCACGGCCAAAATCCATGTCCTAGGTAACAAGTACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTAACTGTCGAGACAAAGGTGGTTGTATGCTTTCAGACAAAGGACCATGGAATGACGCAGAAATCTTGAAGATGGTTCAAAATGGCGAAGGAAAATGCAAGAGGAAAACTTTATCCGGGATTGAAGTGAAAACCATCATTGAGGAGGATACAGCATGTCAAAAGGTGGAATACGATTCTTTAAACAAAGAATCTGCAGCCGTGGAGCATCCCAATACTACTCCAAAAGTGACCTTTGCCCCAGAGAATACATCATGTGAAAAAACAGAACAAAATGATGGGTCAGGCCTTTCTAAAGATTGTTTGCCTAGCAACAATAGTTCTAATGGGTTTAGAATCCCTTTTACTGGTGGAATCATGTCCATTATTATGGGATTGATAGCAATGATCCGAATGGCGAAGAACATGCCAAGGAAAATCACTGGAACTGAGTTGTTTGGTAACACAGCATATTGTAGTAGCAACGAGATGAAAACGCCTGACATTTCCATGGATGATCAAATGCCCATGATGAAGCGCATTGCTGAACTAGAAGAGAAGGTGAATGAGCTCTCTAAGAAACCTGTCATACCACCTGAGATGGAAGAATTGCTGAATAAAACCCTTAACAGAGTCAGCACGCTGGAGCAAGAGTTGGCTATTACCAAAAAATCACTTGACGATGCCTTTACCCGACAAGTAGAGCTTCAAACTCAAATTGACAAAAGGAAAAAGAAGAAGTTCGTAAGTCATCCGAAGCTTGATTTTGATATATTATTACTTGTGCATCGTGCTTTCTCTTACACAAGACTTTGGGTTCGTGATTGCAGTTCCGCTGGTAAAGTGTTGGGTATCCATTGCTGCCTGACCTGA 1788 0.4172 MCDIIAMPSIPITDRPAKGGVEMEYLEDDKKTKLGSLKKVAISASSKFKHSLQKKGRRHSRVMSIAIEDEVDAEELQAVDAFRQTLILEELLPSKHDDHHMMLRFLRARKYDIEKTKQMWADMLLWRREFGADTIMEDFEFKELQEVRKYYPQGNHGVDKQGLPVYIERLGQVDSNKLLQVTTLDRYLKYHVREFERTFLVKFPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCNCRDKGGCMLSDKGPWNDAEILKMVQNGEGKCKRKTLSGIEVKTIIEEDTACQKVEYDSLNKESAAVEHPNTTPKVTFAPENTSCEKTEQNDGSGLSKDCLPSNNSSNGFRIPFTGGIMSIIMGLIAMIRMAKNMPRKITGTELFGNTAYCSSNEMKTPDISMDDQMPMMKRIAELEEKVNELSKKPVIPPEMEELLNKTLNRVSTLEQELAITKKSLDDAFTRQVELQTQIDKRKKKKFVSHPKLDFDILLLVHRAFSYTRLWVRDCSSAGKVLGIHCCLT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00486 595 Gene3D - 60 130 - -
Phco9g00486 595 PRINTS Cellular retinaldehyde-binding protein signature 270 289 - -
Phco9g00486 595 PRINTS Cellular retinaldehyde-binding protein signature 303 312 - -
Phco9g00486 595 PRINTS Cellular retinaldehyde-binding protein signature 101 123 - -
Phco9g00486 595 Coils Coil 510 530 - -
Phco9g00486 595 MobiDBLite consensus disorder prediction 378 413 - -
Phco9g00486 595 Pfam CRAL/TRIO domain 149 311 IPR001251 -
Phco9g00486 595 SMART CRAL_TRIO_N_2 98 123 IPR011074 -
Phco9g00486 595 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 143 317 IPR001251 -
Phco9g00486 595 SMART sec14_4 143 314 IPR001251 -
Phco9g00486 595 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 23 548 - -
Phco9g00486 595 Pfam CRAL/TRIO, N-terminal domain 95 122 IPR011074 -
Phco9g00486 595 FunFam SEC14 cytosolic factor 131 343 - -
Phco9g00486 595 SUPERFAMILY CRAL/TRIO N-terminal domain 69 139 IPR036273 -
Phco9g00486 595 CDD SEC14 141 312 IPR001251 -
Phco9g00486 595 Gene3D - 131 342 IPR036865 -
Phco9g00486 595 MobiDBLite consensus disorder prediction 376 413 - -
Phco9g00486 595 SUPERFAMILY CRAL/TRIO domain 143 339 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00486 Phco-Chr9 3560676 3564219 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00486 9 3560676 3564219 Phco9g00486 9 3560676 3564219 ECH
Phco9g00486 9 3560676 3564219 Phco8g00457 8 4279035 4284097 ECH