Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00239 ATGACTTCATATGACTCTGAATCTGTAACCTTTCATAGGACTTTTAAGATTAGTCTCTGTCCTTCAAATATGTCGTCAAAACCATTCAAGCCAAGCCGGTTATCTCATTCTCAGCCAGCAACTACTGAGGCATCTGATGGCCAGAAGCCTCCTTTGCCTCCAACCGTTACGTTTGGACGAAGAACTTCCTCGGGTCGCTACATCAGCTACTCAAGAGATGATCTTGACAGTGAACTTGGGAGTAGTGACTTCATGAATTACACAGTGCATATGCCTCTGACACCTGATAACCAACCTATGGATCCATCAATTTCACAGAAAGTTGAGGAACAATATGTGTCAAGCTCCCTTTTCACCGGAGGATTCAACAGTGTTACTCATGCCCATCTAATGGATAAGGTGATAGAATCCGAAGCAAGCCATCCACAGATGGCTGGTGCAAAAGGATCTTCATGTGCAATTCCTGGTTGTGATTGTAAGGTGATGAGTGATGAACGTGGTGTGGATATTCTCCCTTGTGAGTGTGACTTTAAGATATGCAGAGACTGCTATATAGATGCAGTAAAAGCAGGAGATGGAATGTGCCCCGGATGCAAAGAGCCTTACAAAAACACAGAGCTAGATGAAGTTGCTGTGGATGAACGAAATGGAAGGCCATATCCGCTTCCTCCCTCAAGTGGAGTGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCAACAAAGTCAGCGCTAATGAGAAGTCAGACTGGAGATTTTGATCACAATCGGTGGCTCTATGAAACAAAGGGTACCTATGGTTATGGCAATGCTATTTGGCCAAAGGGAGGAAATTTTGGAAGTGGAAATGGGGATGATGATGTTGTTGAGCCAATGGATCTGATGAACAGACCCTGGAGGCCACTTACTAGGAAACTCAAGATACCTGCTGCTGTTCTCAGCCCATATAGACTCATCATATTCATTCGGTTGGTTGTGCTGGTACTGTTCCTGGCATGGAGGGTGAAGCACAAAAATAGCGATGCAATCTGGCTATGGGGAATGTCTGTGGTATGTGAGATATGGTTTGCCTTTTCCTGGCTACTGGATCAACTGCCCAAGCTATGTCCAATAAATCGTTCCACAGATCTTAATGTTCTGAAGGAAAAATTTGAAGTGCGAAGTCCCAACAATCCTACTGGAAAGTCTGATCTACCAGGCATAGATGTCTTTGTCTCTACCGCCGATCCCGAGAAAGAACCACCTCTTGTCACTGCAAACACCATCTTATCTATCCTAGCCGCAGACTATCCAGTTGAGAAACTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTCTGACATTTGAGGCAATGGCTGAAGCTGCCAGTTTTGCCAACGTGTGGGTTCCATTCTGCCGTAAGCATGATATAGAGCCTAGGAATCCTGAATCATATTTCAACTTAAAGAGAGATCCCTACAAAAACAAAGTCAAACCAGATTTTGTCAAGGATCGTAGACGGGTGAAGCGTGAGTATGATGAGTTCAAAGTCAGGATCAACGGTCTGCCTGACTCTATCCGGCGCCGGTCAGATGCCTTTCATGCAAGAGAGGAATTGAGGGCCATGAAATTGCAGAGACAAAATAAGGTAGATGAACCTGTAGAAGCTTTAAAGATTCCAAAAGCCACATGGATGGCTGATGGAACTCACTGGCCAGGGACTTGGTTGAATCCTTCATCCGAGCACTCTAAGGGTGATCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGTGATGAACCTCTTCTGGGAAATGCTGATGATGAAAAGCTCATTGACTTGGCTGATGTTGATATCCGTCTCCCTCTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGCTATGATCACAACAAAAAAGCCGGGGCCATGAATGCCTTGGTTCGAGCCTCAGCCATCATGTCCAATGGTCCTTTTATACTCAATCTTGACTGTGACCACTACATCTACAACTCCAAGGCAATGAGGGAAGGTATGTGCTTTATGATGGACCGAGGTGGTGACCGCATTTGCTATGTTCAGTTCCCTCAAAGATTTGAGGGGATTGACCCTTCTGACAGATATGCCAATCATAACACTGTCTTCTTTGATGTCAACATGAGAGCACTTGATGGACTTCAAGGACCAGTCTATGTAGGAACTGGTTGTCTTTTCAGAAGAGTTGCTCTTTATGGTTTTGATCCTCCTCGCTCTAAAGAACATCCTGGCTGCTGTAGTTGCTGCTTTGGCAGAAGAAAGAAGAATGCTAACATCTCCGAAGAGAACCGGTCACTGAGGATGGGTGACTCTGATGAAGAAGAAGAAGAAATGAATCTATCAATGTTCCCTAAGAGATTTGGAAACTCAACTTTACTCATTGACTCAATCCCCGTGGCAGAGTTTCAAGGCAGGCCACTTGCTGATCACCCTGCAGTAAAGAATGGACGCCCTCCGGGCGCCCTCACCATACCACGCGAGCTTCTTGATGCATCAACTGTGGCAGAGGCCATCAGTGTGATCTCTTGCTGGTATGAGGACAAAACTGAGTGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAAGATGTGGTTACTGGCTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTTACCAAGCGTGATGCATTCCGTGGCACTGCTCCCATCAATCTCACTGACAGGCTGCATCAGGTCCTTAGATGGGCAACTGGGTCAGTTGAGATATTCTTCTCAAGAAACAATGCACTTCTGGCTAGCCCAAGAATGAAGTTTCTCCAAAGGATTGCATACCTTAATGTTGGAATCTATCCATTTACTTCCTTTTTCCTTATCGTCTACTGCTTCCTCCCTGCACTTTCCCTCTTCTCTGGCCAATTCATTGTTCAAACTCTCAATGTCACTTTCCTTGTTTATCTCTTGACCATCACTGTGACTTTGTGCATGCTGGCAGTGCTTGAAATCAAGTGGTCTGGCATTGAGCTGGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGAACAAGTGCACACCTAGCTGCTGTGCTGCAAGGTCTGCTCAAAGTGATAGCAGGCATTGAAATCTCCTTCACCTTGACATCAAAATCTGGTGGGGATGATGTAGATGATGAGTTTGCTGATCTCTATATTGTGAAGTGGACATCCCTTATGATACCACCAATCACAATCATGATGGTTAACTTGATAGCAATAGCAGTTGGAGTGAGCAGGACCATATACAGTGTGATACCTCAGTGGAGTCGTCTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTCTTGACTCATCTCTACCCTTTTGCAAAAGGGTTGATGGGAAGGAGAGGAAGAACACCAACCATTGTTTTTGTATGGTCAGGTCTCATAGCAATCACAATATCACTCCTTTGGGTGGCCATCAATCCCCCTGCTGGTACCAACCAGATCGGTGGTTCATTCCAGTTCCCATGA 3510 0.4507 MTSYDSESVTFHRTFKISLCPSNMSSKPFKPSRLSHSQPATTEASDGQKPPLPPTVTFGRRTSSGRYISYSRDDLDSELGSSDFMNYTVHMPLTPDNQPMDPSISQKVEEQYVSSSLFTGGFNSVTHAHLMDKVIESEASHPQMAGAKGSSCAIPGCDCKVMSDERGVDILPCECDFKICRDCYIDAVKAGDGMCPGCKEPYKNTELDEVAVDERNGRPYPLPPSSGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLYETKGTYGYGNAIWPKGGNFGSGNGDDDVVEPMDLMNRPWRPLTRKLKIPAAVLSPYRLIIFIRLVVLVLFLAWRVKHKNSDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRSTDLNVLKEKFEVRSPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAFHAREELRAMKLQRQNKVDEPVEALKIPKATWMADGTHWPGTWLNPSSEHSKGDHAGIIQVMLKPPSDEPLLGNADDEKLIDLADVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHPGCCSCCFGRRKKNANISEENRSLRMGDSDEEEEEMNLSMFPKRFGNSTLLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLTITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00239 1169 SUPERFAMILY Nucleotide-diphospho-sugar transferases 416 963 IPR029044 -
Phco9g00239 1169 Pfam RING/Ubox like zinc-binding domain 154 203 - -
Phco9g00239 1169 FunFam Cellulose synthase-like protein D3 135 218 - -
Phco9g00239 1169 FunFam cellulose synthase-like protein D3 606 743 - -
Phco9g00239 1169 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 602 742 IPR029044 -
Phco9g00239 1169 MobiDBLite consensus disorder prediction 26 63 - -
Phco9g00239 1169 Pfam Cellulose synthase 401 1160 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco9g00239 1169 MobiDBLite consensus disorder prediction 26 45 - -
Phco9g00239 1169 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 300 1145 - -
Phco9g00239 1169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 218 IPR013083 -
Phco9g00239 1169 SUPERFAMILY RING/U-box 140 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00239 Phco-Chr9 1562137 1566684 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00239 9 1562137 1566684 Phco4g00161 4 962221 966386 ECH
Phco9g00239 9 1562137 1566684 Phco9g00239 9 1562137 1566684 ECH