LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g00161	ATGGCATCAAAAATGTTTAGAGCAAGCCGATCATCTATATCAACATCATCTGATTCTGCACCTGATGGTCAGAAGCCTCCATTACCTCCAAGTGTACAATTTGGGCGGAGAACTTCCTCAGGCCGCTATGTCAGTTACTCTAGAGATGATCTTGACAGTGAGATAGGGAGTACCGACTTCATGAATTATACGGTGCATATACCAGCTACCCCAGATAACCAACCTATGGATCCATCAATCTCACAGAAAGTTGAGGAGCAGTATGTGTCAAATTCACTTTTCACAGGTGGATTCAACAGCGTTACTCGAGCCCATCTGATGGATAAGGTGATAGAATCTGAAGCAAATCATCCACAGATGGCTGGTGCAAAAGGATCTTCATGTGCAGTTCCTGGTTGTGATTCTAAGGTGATGAGCGATGAACGTGGTGCTGATATTCTTCCCTGTGAGTGTGATTTTAAGATATGTAGAGATTGTTATATAGATGCAGTAAAAACAGGAGGTGGAACGTGCCCAGGATGCAAGGAGTCGTATAAGAACACAGAGCTAGATGAAGTGGCTGCAGATAATGGTCATACTCTTCAACTTCCTCCACCAGGTGGAATGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCGACGAAGTCAGCATTAATGAGGAGCCAAACTGGAGACTTTGATCATAACAGGTGGCTCTTTGAAACAAAGGGGACCTATGGCTATGGTAATGCTATATGGCCAAAGCAAGGTGGTTTTGGAAATGAAATAGAGGATGATGTTGTTGAGCCTACTGAATTGATGAACAGACCCTGGAGACCACTTACCAGGAAACTGAAGATACCTGCTGCTATTTTGAGTCCATATCGTCTTATCATTTTTATTCGTTTGGTTGTCTTGGCACTGTTCTTGGCATGGAGGGTCAAACACCAAAATACTGATGCAGTATGGCTGTGGGGCATGTCTGTTGTTTGTGAGATATGGTTTGCTTTTTCCTGGCTTCTGGATCAACTGCCCAAACTGTGCCCAGTGAATCGTTCGACAGATCTTAATGTTCTTAAGGAGAAATTTGAAACACCCACCCCTAACAATCCAACTGGAAAATCTGATCTTCCAGGAATAGATATATTTGTTTCTACTGCTGATCCTGAGAAAGAACCTCCTCTCGTAACTGCAAACACTATCTTGTCTATTTTAGCCGCTGATTACCCTGTTGAGAAGCTTTCTTGTTATGTTTCTGATGATGGAGGTGCACTTCTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATGCATGGGTTCCCTTCTGCCGTAAACATGATATAGAGCCCAGGAATCCTGAATCATACTTCAACTTAAAAAGAGATCCTTACAAAAACAAAGTGCGGCCTGATTTTGTCAAGGATCGCAGACGAGTAAAGCGTGAGTATGATGAATTCAAGGTTAGGATCAATAGTCTACCTGATTCTATCCGTCGTCGATCAGATGCCTATCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTCAGAGACAAAACAGGGAAGATGAACCTTTAGAAACTGTAAAGATCCCTAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGAACTTGGTTGAATCCTACATCCGAGCATTCTAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGCGATGAACCTCTTCCAGGAAGTGCTGATGATACATGTCTCATTGACCAGACTGATGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTCGAGAGAAGCGCCCTGGCTATGATCACAACAAAAAAGCTGGTGCCATGAATGCCTTGGTTCGAGCCTCAGCAATCATGTCTAATGGTCCATTTATACTCAATCTTGACTGTGACCACTATATCTACAACTCAAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGCGGAGGTGACCGCCTTTGTTATGTACAGTTCCCCCAGAGGTTTGAAGGGATTGACCCCTCTGATAGATATGCCAATCATAATACTGTCTTCTTTGATGTGAACATGCGAGCCCTTGATGGACTTCAAGGGCCAGTATATGTGGGAACAGGGTGCCTTTTCAGACGGATTGCACTATATGGTTTTGACCCGCCCCGATCCAAGGAGCACAACGCAGGTTGTTGTAATTGTTGCTTTGGTCGTCAGAAGAAGCATGCATCAATGGCGAGCACCCCAGAAGAGAGCCGGGCACTGAGGATGGGTGATTCTGACGAGGAGGAAATGAATCTATCACTGTTCCCTAAGAAGTTTGGAAACTCAACTTTCCTCATCGACTCGATTCCTGTGGCTGAGTTCCAAGGCCGGCCACTGGCTGATCACTCTGCCGTGAAAAATGGACGTCCACCTGGTGCTCTCACCATACCCCGTGATCTTCTCGATGCATCGACAGTGGCGGAGGCCATCAGCGTCATCTCCTGTTGGTACGAGGACAAGACTGAGTGGGGAAACCGTGTTGGGTGGATCTATGGATCTGTGACAGAGGATGTGGTCACTGGGTATAGGATGCACAATAGGGGATGGAAATCCGTTTACTGTGTGACCAAGCGTGATGCCTTCCGTGGAACAGCTCCCATAAATCTCACTGACAGGTTGCATCAGGTCCTTAGATGGGCTACTGGCTCAGTTGAAATATTCTTCTCGAGAAACAATGCTCTTCTGGCTAGCCCAAGAATGAAAATTCTTCAAAGAATTGCATATCTTAATGTTGGAATCTACCCCTTCACATCTATATTCCTAATTGTCTACTGCTTCCTTCCTGCACTGTCCCTTTTCTCTGGCCAGTTCATTGTGCAAACCCTCAATGTCACTTTTCTTTCTTACCTCTTGGGCATCACTGTGACTTTGTGCATACTTGCAGTGCTTGAAATTAAGTGGTCTGGCATTGACCTGGAAGAATGGTGGAGAAATGAGCAGTTCTGGCTGATTGGAGGGACCAGTGCTCATCTTGCTGCTGTGCTTCAAGGTTTGCTGAAAGTCATAGCAGGGATTGAAATATCATTCACTTTGACTTCAAAGTCAGGTGGTGATGATGTAGATGATGAATTTGCTGATCTGTATATTGTGAAATGGACATCTCTTATGATACCACCTATCACAATTATGATGGTTAACTTGATAGCAATAGCAGTTGGAGTTAGCAGAACCATATACAGTGTCATACCACAGTGGAGCCGTCTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTCTTGGCTCATCTATATCCCTTTGCAAAAGGTTTGATGGGAAGAAGAGGAAGAACACCTACCATAGTTTTTGTATGGTCAGGCCTCATTGCAATCACAATTTCTCTCCTTTGGGTGGCCATCAACCCCCCTGCTGGTTCTAACCAAATTGGTGGTTCATTCCAGTTCCCTTGA	3435	0.4466	MASKMFRASRSSISTSSDSAPDGQKPPLPPSVQFGRRTSSGRYVSYSRDDLDSEIGSTDFMNYTVHIPATPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAVPGCDSKVMSDERGADILPCECDFKICRDCYIDAVKTGGGTCPGCKESYKNTELDEVAADNGHTLQLPPPGGMSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKQGGFGNEIEDDVVEPTELMNRPWRPLTRKLKIPAAILSPYRLIIFIRLVVLALFLAWRVKHQNTDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFETPTPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANAWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRPDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKVQRQNREDEPLETVKIPKATWMADGTHWPGTWLNPTSEHSKGDHAGIIQVMLKPPSDEPLPGSADDTCLIDQTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKEHNAGCCNCCFGRQKKHASMASTPEESRALRMGDSDEEEMNLSLFPKKFGNSTFLIDSIPVAEFQGRPLADHSAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGNRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCILAVLEIKWSGIDLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGSNQIGGSFQFP	1144

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g00161	1144	Pfam	Cellulose synthase	374	1134	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Phco4g00161	1144	MobiDBLite	consensus disorder prediction	1	47	-	-
	Phco4g00161	1144	MobiDBLite	consensus disorder prediction	1	22	-	-
	Phco4g00161	1144	Pfam	RING/Ubox like zinc-binding domain	130	179	-	-
	Phco4g00161	1144	FunFam	cellulose synthase-like protein D3	579	716	-	-
	Phco4g00161	1144	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	576	715	IPR029044	-
	Phco4g00161	1144	FunFam	Cellulose synthase-like protein D3	111	194	-	-
	Phco4g00161	1144	SUPERFAMILY	RING/U-box	113	183	-	-
	Phco4g00161	1144	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	273	1120	-	-
	Phco4g00161	1144	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	111	194	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g00161	Phco-Chr4	962221	966386	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco9g00239	9	1562137	1566684	Phco4g00161	4	962221	966386	ECH
	Phco4g00161	4	962221	966386	Phco4g00161	4	962221	966386	ECH