Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02862 ATGGCGGATGAGAGCGTTGTTGAGTCCCCAGTGAAGAGGCAAAGAGATGATGAAGAAAATGGGGCCTCTGTTTCCATGGATACGGAGGGTGGCAGAGACCCTCAGGGTAATGGTTTATCGTCTGTGATTCCTGGCTGGTTCTCTGAAATCAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAAAAAATTTTGTTTCAAGGAAAGTCTGAATACCAGAATATCATGGTCTTCCAGTCGTCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTAATCCAGTTAACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCCCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATCGGAGGAGGTGATGGAGGAGTCCTCCGAGAAATAGCACGCCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAGCATGGTTGTTGATGTCTCCAAACAGTATTTCCCTGATGTAGCTGTAGGGTATGAGGATCCTCGTGTGACACTTACTGTTGGTGATGGAGTTGCGTTTCTGAAGAATGTTCCAGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAGGAGCTATTTGAAAAGCCCTTCTTTGGGTCAGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATAGTGTCAAATTGTCGCCACATTTTTAAAGGATCTGTTAACTATGCTTGGACTACTGTTCCTACATATCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCGTAGATGAAAATGAGTGTCAGAAGTCAGCAAGACCACTGAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCATTTGCAAAGAGGAAAATTGGTCCTAAAGCAAATTAG 1005 0.4358 MADESVVESPVKRQRDDEENGASVSMDTEGGRDPQGNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNIMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREIARHSSVEKIDICEIDSMVVDVSKQYFPDVAVGYEDPRVTLTVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFGSVAKALRPGGVVCTQAESIWLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPVDENECQKSARPLKFYNSEIHTAAFCLPSFAKRKIGPKAN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02862 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 38 330 IPR001045 GO:0003824
Phco8g02862 334 FunFam Spermidine synthase 1 37 96 - -
Phco8g02862 334 MobiDBLite consensus disorder prediction 1 22 - -
Phco8g02862 334 NCBIfam spermidine synthase 46 324 IPR001045 GO:0003824
Phco8g02862 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Phco8g02862 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 329 IPR029063 -
Phco8g02862 334 CDD AdoMet_MTases 122 233 - -
Phco8g02862 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Phco8g02862 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Phco8g02862 334 FunFam Spermidine synthase 1 97 334 - -
Phco8g02862 334 MobiDBLite consensus disorder prediction 1 38 - -
Phco8g02862 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Phco8g02862 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Phco8g02862 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Phco8g02862 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Phco8g02862 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02862 Phco-Chr8 42121061 42124697 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02862 8 42121061 42124697 Phco8g02862 8 42121061 42124697 ECH
Phco4g01459 4 12909227 12912331 Phco8g02862 8 42121061 42124697 PCT