Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01459 ATGTGCGTGCATTCCCTACTCACTTCAGAGAAGAACATGGCTGCGGAGAACAACAACGTGGTTCAGTTCTCAGACTTACCCGTCAAGAGACCCAGAGAAGAAGAACAAGACGGCGGAGGAAATGGCGTCCCCGACACCCTTTCAACGCTCCCCAATCACTCAAAACAATCTGGTCTCTCTGCGGTAATTCCCGGTTGGTTCTCTGAAATCAGCCCAATGTGGCCTGGGGAGGCGCATTCTTTGAAGGTGGAAAAGGTTCTTTTTGAAGAGAAGTCTGAATATCAGAATGTCATGGTCTTCCAGTCGTCAACTTATGGCAAAGTTCTTGTTCTGGATGGGGTCATTCAGCTTACAGAGAGGGATGAGTGTGCCTACCAAGAGATGATAACACATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTCATTGGAGGAGGAGATGGTGGAGTCCTGCGTGAAGTAGCACGCCATTCCTCAGTAGAAAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGAGGTCTCCAAACAATTTTTTCCAGATGTATCTGTAGGTTTCGAAGATCCACGTGTGACACTTAATATTGGTGATGGAGTTGCATTTTTGAAGGCTGTTGAAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCAGACCCTATTGGTCCTGCTCAAGAACTGTTTGAAAAGCCTTTTTTCGCCTCGGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTATGTGTACTCAAGCAGAAAGTATATGGCTCCATATGGATATAATTGAGGGCATTGTGGCAAATTGTCGCCAGATATTCAAAGGTTCTGTCAACTATGCATGGACCACGGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGTTCAACTGAGGGTCCTACTGTGGACTTCAAGAATCCAGTGTATTCTATAGATGAGGATGATACTCAACAGTCAACTAGACCATTGAAATTTTACAACTCTGAGATTCATTCTGCGGCTTTCTGTTTGCCATCTTTTGCCAAAAGGGCTATTGGTTCTAAAGCAAACTGA 1065 0.4441 MCVHSLLTSEKNMAAENNNVVQFSDLPVKRPREEEQDGGGNGVPDTLSTLPNHSKQSGLSAVIPGWFSEISPMWPGEAHSLKVEKVLFEEKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVEVSKQFFPDVSVGFEDPRVTLNIGDGVAFLKAVEEGTYDAVIVDSSDPIGPAQELFEKPFFASVARALRPGGVMCTQAESIWLHMDIIEGIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPTVDFKNPVYSIDEDDTQQSTRPLKFYNSEIHSAAFCLPSFAKRAIGSKAN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01459 354 PIRSF Spermidine_synth 54 354 IPR030668 GO:0006595
Phco4g01459 354 FunFam Spermidine synthase 1 117 354 - -
Phco4g01459 354 CDD AdoMet_MTases 142 253 - -
Phco4g01459 354 MobiDBLite consensus disorder prediction 23 54 - -
Phco4g01459 354 Gene3D Vaccinia Virus protein VP39 119 354 IPR029063 -
Phco4g01459 354 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 64 301 IPR030374 -
Phco4g01459 354 Pfam Spermidine synthase tetramerisation domain 65 119 IPR035246 -
Phco4g01459 354 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 143 156 IPR030373 -
Phco4g01459 354 PANTHER SPERMIDINE/SPERMINE SYNTHASE 57 351 IPR001045 GO:0003824
Phco4g01459 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 62 349 IPR029063 -
Phco4g01459 354 Hamap Polyamine aminopropyltransferase [speE]. 65 350 IPR001045 GO:0003824
Phco4g01459 354 NCBIfam spermidine synthase 66 344 IPR001045 GO:0003824
Phco4g01459 354 FunFam Spermidine synthase 1 57 116 - -
Phco4g01459 354 Pfam Spermine/spermidine synthase domain 122 310 - -
Phco4g01459 354 Gene3D Spermidine synthase, tetramerisation domain 46 118 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01459 Phco-Chr4 12909227 12912331 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01459 4 12909227 12912331 Phco4g01459 4 12909227 12912331 ECH
Phco4g01459 4 12909227 12912331 Phco8g02862 8 42121061 42124697 PCT