Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02852 ATGAGTTGGGTTCATTCTCAAATCTGCCATAGCAGTGATGCTATCAACAACCCCGCTAGTATTTCCCCATCTTCTTGTTCTTCTTCTGCACCATTGCCTTACAGTTCTGAGTACAAGAAACAACTGGCCCCTCCTCTATCTTCTTCATCTGGCACTAGAATAAGCCCTGCAATTGTTTTCATCTTTGTCATTCTAGCTATTGTGTTTTTCATCTCTGGTCTCCTTCACTTGCTTGTTAGATTCCTCATAAGGCACATGTCCTCTTCGTCAATTTCCCAGTCCAATAGGTACCCTGACATGTCTGAACCTGATCCTTACCAGAGGCAGTTACAGCAGCTCTTCCATCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCCTATACAAAGACATAATAGGTTTGAAGGAGCCTTTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCCGAACAAGACATGCTGAGGCTGCTGCCCATTTGCAACCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTCTCAAATTCAACTTGTCCTCTCTGCAGAGGGAGTCTTTATGAGCCAGGCTTTGCCTTTGAAAACCCAGTTTATGACTTTGATGGTCTGAGGGAGGAAGCTGGGGTTTCGGGCAGTGCTGCTGGAGAGGCTGGTTCCATTAACAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAAGGGGTGGAAAGAGGAGGAGGAGAAGGGGAGAGCAGTACAAGTAATTTGGATGCTAGGAGATGCTATTCAATGGGGTCCTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGGAGCTGCCAGTGGTGGCAGTGTGAGACAATTCAAAGGTAGATTGGACCATTTTGGGAATTCTTCAACTGACGGGGATGTTGAGGGCAAAAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTATCAAGTTCACCACAAAACTATTTGGGTGGTTCTAATGTCACTGCAGCTTTGCCATGTATGAATAGAGCTCAAGGTACATGA 1149 0.45 MSWVHSQICHSSDAINNPASISPSSCSSSAPLPYSSEYKKQLAPPLSSSSGTRISPAIVFIFVILAIVFFISGLLHLLVRFLIRHMSSSSISQSNRYPDMSEPDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPICNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYDFDGLREEAGVSGSAAGEAGSINKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGGGEGESSTSNLDARRCYSMGSFQYVVADSDLQVALCPNRGDGGAASGGSVRQFKGRLDHFGNSSTDGDVEGKKINIARKGESFSVSKIWQWSRKDKVSSSPQNYLGGSNVTAALPCMNRAQGT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02852 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 49 348 - -
Phco8g02852 382 SMART ring_2 146 187 IPR001841 -
Phco8g02852 382 SUPERFAMILY RING/U-box 125 194 - -
Phco8g02852 382 CDD RING-H2_EL5-like 145 188 - -
Phco8g02852 382 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Phco8g02852 382 FunFam RING-H2 finger protein ATL46 108 193 - -
Phco8g02852 382 Pfam Ring finger domain 145 188 IPR001841 -
Phco8g02852 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02852 Phco-Chr8 41915307 41916455 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02852 8 41915307 41916455 Phco8g02852 8 41915307 41916455 ECH
Phco4g01466 4 13162591 13163915 Phco8g02852 8 41915307 41916455 PCT