Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01466 ATGTATAGGGTTCACTCTCAAATCCTTCTCAGCAATGGTGTTTTCACCAACCCCCCTATTCTTTCTCCATATTCTTCATCTTCTTCTTCCCCCTCGGTGCCTTATGTTTCCAACTACCAGAAACAATCAGCTCCATCCCCAACTTCTTCATCGGGGAACAAAATAAGCCCCGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTAATTCATCAATTTCCCAATCAAATAGATACCCTGACATGTCCGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATTATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAATTGAGATTGTTGCCCACGTGTAACCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAACTCAACTTGCCCTCTCTGTAGAGGGACTCTGTATTCACCAGGCTTTGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGGTATCAGGCAGTGGTGGAGTCGGGGTTGGGGTTGGTTCTTTTCACAAAACTGTAGAAAGTCACATCCTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCTCTAATAATGGAGATGGGGTGGAGAGAGGTGAAAGTGAGAGCAGTAGAGGAAATTTGGATGTAAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTCCTAGAGGTGATGGAGGGAGCAGTGGCAGCATGAGACAACTGAACGGAAGAGCAGCCCCAAATGGAAGTTCTTTCATTGATGCCGATATTGAGGGTAAGAAAATCAACCTTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGTCAGGTTTATCTGATGCTCACTTCCATAATTCTACTATCACTGCAACTTTGCCATGGATGAATAAAGCCAGAGTGAGAGAACTTGTAAATTGTGACATAAACATAATCAGGCAATGCTCTTTGAACAAGAATTAA 1203 0.4248 MYRVHSQILLSNGVFTNPPILSPYSSSSSSPSVPYVSNYQKQSAPSPTSSSGNKISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPTCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSAFDFESQLEEDGVSGSGGVGVGVGSFHKTVESHILNGKRVFSVRLGKFRSSNNGDGVERGESESSRGNLDVRRCYSMGSFQYVVADSDLRVALGPPRGDGGSSGSMRQLNGRAAPNGSSFIDADIEGKKINLARKGESFSVSKIWQWSRKDKLSGLSDAHFHNSTITATLPWMNKARVRELVNCDINIIRQCSLNKN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01466 400 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Phco4g01466 400 SUPERFAMILY RING/U-box 127 196 - -
Phco4g01466 400 CDD RING-H2_EL5-like 147 190 - -
Phco4g01466 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 195 IPR013083 -
Phco4g01466 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 348 - -
Phco4g01466 400 Pfam Ring finger domain 147 190 IPR001841 -
Phco4g01466 400 SMART ring_2 148 189 IPR001841 -
Phco4g01466 400 FunFam RING-H2 finger protein ATL46 110 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01466 Phco-Chr4 13162591 13163915 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01466 4 13162591 13163915 Phco8g02852 8 41915307 41916455 PCT