Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02821 ATGTTCAAACCCCAACCTCACCAACTAATCATCCTTGCTTTCTTACTTTCCTTCTCTCTCACAAACGTCGTCGTTTCAGCTCGACTCTTCCCCAACGTCTCCTCCTTCCTCCCCGCCCACGCGCCTCTCGGAGGCGCGTGGGAAGCCTTTCGTAACCTCACCGGCTGCCATCGCGGCGATAACTACGACGGCCTCGCCAACCTCAAATCCTACTTCGAGCGCTTCGGCTACTTCCCTCACGCGCCGCCATCCAACTTCTCCAACGAGTTCGACGACGCGCTCGAATCCGCGATCAAAACTTACCAGAAGAATTTCAACCTCAACGTCACCGGCGTCCTCGACGACGCCACGCTTAGGCAGATCGTCCTGCCGCGGTGCGGCGTCGCCGACATAATCAACGGCACCACGACGATGAACGCCGGGAAGCAGAACGAAACGGCGTCGTTCAGCAAGCCGCGGTTCCACACGGTGGCGCACTTCGCTCTATTCCCCGGCAATCCGCGGTGGCCGGAGGGAACGGAGGAGCTCACGTACGCGTTCAACCCCGGCAACGACCTTAGCGACACCGTGAAAGGCGTTTTCGCCGCCGCCTTCGCTCGGTGGGCGGAGGTGACGTCGTTAACGTTCCGTGAGACGGCGTCGTACTTCAGCGCCGACATCAGGATCGGTTTCTTCAGCGGTGACCACGGCGACGGGGAGCCGTTCGACGGCAGTTTGGGGACGCTGGCCCACGCGTTCTCGCCGACGAATGGAAGGTTCCACCTGGATGCCGACGAGGACTGGGTGGTTTCCGGCGACGTGACGCAGTCGGCACTGTCAACGGCGGTGGATTTGGAATCAGTGGCGGTGCACGAGATTGGGCACTTGTTAGGACTAGGTCACTCGTCTCTGGAAGAAGCGGTTATGTTTCCGACGATTTCGTCGCGGAGAAAAAAGGTAGTGCTAGCACATGATGATATTGAAGGGATTCAGTTTCTCTACGGTTCTAATCCCAATTTTAATGGTTCTACTGTGACATCGGCACCGGAGAGAGACACCAACGACGGTGGCCGTTGCCTCACTTGTGTGGGCTCCTCCTGGAGCGTTTTCACTTTGTTGACTTTTTCAACTTTATATTTTACATTATTATAG 1131 0.5712 MFKPQPHQLIILAFLLSFSLTNVVVSARLFPNVSSFLPAHAPLGGAWEAFRNLTGCHRGDNYDGLANLKSYFERFGYFPHAPPSNFSNEFDDALESAIKTYQKNFNLNVTGVLDDATLRQIVLPRCGVADIINGTTTMNAGKQNETASFSKPRFHTVAHFALFPGNPRWPEGTEELTYAFNPGNDLSDTVKGVFAAAFARWAEVTSLTFRETASYFSADIRIGFFSGDHGDGEPFDGSLGTLAHAFSPTNGRFHLDADEDWVVSGDVTQSALSTAVDLESVAVHEIGHLLGLGHSSLEEAVMFPTISSRRKKVVLAHDDIEGIQFLYGSNPNFNGSTVTSAPERDTNDGGRCLTCVGSSWSVFTLLTFSTLYFTLL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02821 376 CDD ZnMc_MMP 175 328 IPR033739 GO:0008237|GO:0008270
Phco8g02821 376 PRINTS Matrixin signature 121 134 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco8g02821 376 PRINTS Matrixin signature 281 306 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco8g02821 376 PRINTS Matrixin signature 194 209 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco8g02821 376 PRINTS Matrixin signature 218 246 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco8g02821 376 PRINTS Matrixin signature 315 328 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco8g02821 376 SMART col_5 165 329 IPR006026 GO:0006508|GO:0008237|GO:0008270
Phco8g02821 376 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 162 332 - -
Phco8g02821 376 SUPERFAMILY PGBD-like 55 131 IPR036365 -
Phco8g02821 376 Pfam Putative peptidoglycan binding domain 65 120 IPR002477 -
Phco8g02821 376 FunFam Metalloendoproteinase 1 55 333 - -
Phco8g02821 376 PANTHER MATRIX METALLOPROTEINASE 45 338 - -
Phco8g02821 376 Gene3D Collagenase (Catalytic Domain) 53 334 IPR024079 GO:0008237
Phco8g02821 376 Pfam Matrixin 173 328 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02821 Phco-Chr8 41535009 41536139 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02821 8 41535009 41536139 Phco8g02821 8 41535009 41536139 ECH
Phco4g01530 4 14246323 14247360 Phco8g02821 8 41535009 41536139 PCT