Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01530 ATGAAACCAAACCTTTCTGCGTTCCTATTGTTGTTCCTTCTTCTTCTCGACCAATACCTTTGCGCGAAGGCTGGTTTTCCTCCTCTTAAAAACTCCATGCTCAAATGGCTAAAAAGGGGGAAAAAACCACCTAAGCCAGAATGGGATAGTCAAATCTATGAGTTTCTCAGACAAAAGTCTTCTCCTCCACAACAAAACCAACCAACGAAAGGCTTGTCTCGAATCAAAGACTACTTTTCTAACTTTGGCTACCTTCAATCCTCTGGGCCATTCGACGATTATTGGGACCTCCAAACAGTATCAGCCATCAAGACCTTCCAACGCTCTTTCAATCTCCAAGTTACCGGCTCTGTAAACAACCAGACCATTCAACTAATCTCGCGACCACGATGCGCTGTCCCGGACATGGATTTCAACTATAACTTCACCGACAACGTGTCATTGCCCAAAGCCGGTCACCAGTGGTTCCAAAAGAGAAACCTCACCTACGGTTTTCTTCCGGCAAGTGAAATCCCAGCCAATGCCACGAAAGTGTTCAGAGATGCATTCGCGCGGTGGGTGAATACCACAGGGTTTTTTAACCTCACGGAGACAACCTACGATGACGCGGACATTAAGGTAGGATTCTACACTTTCACTGAAGGCGTTGATGACGACTTGTTTGGCTTCAGCTTTATAAGGGAGAAACCTCCGTCTAACAAAAAGACAGCGGAGATACGTCTGAATGGGAACATGTACTGGGCGCTGCCCAGTGAAAATGATAGCTTGTCGAGGGAGGATGGATTTCTGCACTTGGAGAGTGTGGCGATGCACGAGATAGGACATTTACTTGGACTTGACCACTCTTTCATGAATGAGTCTATTATGTACCCTTACGTATTGCCATCACAGCAACGAAAGATAGAACTATCCAATTCTGACAAGAACAACATTCTGCAACAGCATAGTGGTGCCAAGTCTGGTTATTGTGGAAGTTGGGAAGTGCTAGTAATTACCACCTTCTCTCTGGGATTTGGTTATGGAAAAATGTTTATTTGA 1038 0.4509 MKPNLSAFLLLFLLLLDQYLCAKAGFPPLKNSMLKWLKRGKKPPKPEWDSQIYEFLRQKSSPPQQNQPTKGLSRIKDYFSNFGYLQSSGPFDDYWDLQTVSAIKTFQRSFNLQVTGSVNNQTIQLISRPRCAVPDMDFNYNFTDNVSLPKAGHQWFQKRNLTYGFLPASEIPANATKVFRDAFARWVNTTGFFNLTETTYDDADIKVGFYTFTEGVDDDLFGFSFIREKPPSNKKTAEIRLNGNMYWALPSENDSLSREDGFLHLESVAMHEIGHLLGLDHSFMNESIMYPYVLPSQQRKIELSNSDKNNILQQHSGAKSGYCGSWEVLVITTFSLGFGYGKMFI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01530 345 PANTHER MATRIX METALLOPROTEINASE 58 313 - -
Phco4g01530 345 FunFam Metalloendoproteinase 5-MMP 63 319 - -
Phco4g01530 345 Gene3D Collagenase (Catalytic Domain) 61 317 IPR024079 GO:0008237
Phco4g01530 345 Pfam Putative peptidoglycan binding domain 73 125 IPR002477 -
Phco4g01530 345 SUPERFAMILY PGBD-like 63 136 IPR036365 -
Phco4g01530 345 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 154 311 - -
Phco4g01530 345 PRINTS Matrixin signature 268 293 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco4g01530 345 PRINTS Matrixin signature 126 139 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco4g01530 345 Pfam Matrixin 155 313 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Phco4g01530 345 SMART col_5 151 318 IPR006026 GO:0006508|GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01530 Phco-Chr4 14246323 14247360 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01530 4 14246323 14247360 Phco8g02821 8 41535009 41536139 PCT