Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02629 ATGGATCCTCAGCTGCTGCAGGTAGTTGCACTGTTGACAATGATAGCATTTGGAGGCACAAGTTGGACTATAGAAGCCTGCAGCCCCATTGACCTGGAAGCTTTGATGAGCTTCAAGAATGGAATTCAAAAGGACACATCTGGTCGCTTAGCTAAGTGGATTGGTGCGAGCTGCTGCAAGTGGGAAGGTATTGTCTGTGAAAATGCAACCTCTAGAGTGACACAGATCAATCTCCCAGGATTTATTTCCACAGATACAGATTTATTTCAAACACAAATGATAGGGCGGATTTCTCCTTCCATAACACTCCTCGCCTCCCTTGAAATCATTGATCTTGGTGGTTTAGTTGGTCTTAGTGGAGCTATTCCGCACACCATTGGTTTGCACCTGCCAAAGCTCCAAAAGCTCTACCTTTATGGCAACAATTTAACTGGTCCAATACCAGAAAGCATTGGACAGTTTCCAAACCTCCAAGAACTAGCTCTCCAGGAAAATCAGCTATGGGGGTCTATTCCTATGAGCCTTGGAAGCCTTAAAAGTCTCAAAAGGTTGCTGCTTTATTCAAATAAATTTTCAGGTATAATACCAGACTCACTTGGGAATTTGATAAATTTGATAGAATTGGATGCTCATGACAACGCTCTTGTCGGTAATATACCCAATAGTGTTGGTGAGATGAAGGCTTTGACAAAGCTTGATCTTTCAAACAATTTGCTAAGCGGGAAGATGCCTTCTTCATTAACCAATTTAACCGCCATTTCAGTTTTGTACCTGAACACCAATTCTCTTGAGGGAACCATGGTATTTCCTTCCAGACCTGGTGAAATGTCTTCTCTGGGCTTCTTAAGACTCCATAATAATCTCCTTGTTGGAAATATACATTCCAATATTGGCTATTTGGTATCTCTTCAAAGACTTTCACTATCAAACAACAAACTTGAAGGAGTACTGCCGTCTAGTTTAGGCAATTTGGTATCACTGACTGAGTTATATCTCAGTGGTAACTTCTTATCTCATCAAATACCAAAATCAGTAGGCCAACTTTCTCGGCTCATAATGTTGAACATCTCTAGAAATTTGATTGAAGGACCATTACCTCAAGAGATATCTTCCCTTCAAAATCTTCAAACACTTGATCTTTCTTTCAACCATCTGAAACTCTCTGCCATTCCAAAATGGATGGCAAACATGTCATCACTTTCCAACATTTACTTGGCTGGGGTTGGAATCCAGGGCCAAATTCCAGATTTTTTCCAAACAACCAATAGTCCAATACAGGAACTGGACTTGTCAGTAAACATTCTCAGTGGAAGCATACCATCATGGATAGGAAGCCTCAGTCAACTCTACTTGTTAAATCTCTCGAGGAACTCCCTTTATTCAGATATCCCTGATTCCTTTAGAAATTTGCAAGATCTAGGTGTCCTTGATCTTCACTCAAATAGACTAACAGGTTCCATAGCTCCAGTATTTGACATAGAACAAGGTATTTTCGGGGGTTCACTGAAATTTGTTGATCTTTCTGAAAACAATTTCTCAAATGGAATTGAGGAAATTGGTGGAGGGCAATGTAGTATTCAGTTTCTGAATTTGTCTCATAACCATCTGGAAGGTAGGTTGCCAAATTCAATTGGGAGATTGAATTCACTTAATAGTTTGGATTTGAGCTTCAACGAATTAGGCTCCAACTTGCCTGAAATGCTGGCAAATTTAACCTCATTGGAGATATTGAAGCTACAGGAAAATCACTTCACCGGTAAAATTCCAAACGGATTTCTCAAGTTGTTGTGGCTAAAGGAATTAAACGTATCTAACAATCATCTTGAAGGGGAAATTCCAGAGGGCAAACCTTGGATTGAGTTTCCTCAGAGTTCATATTCTGGAAATAAAGGGTTATGTGGAAAGCCTCTCGGTCCTTGTAAACTTTGA 1929 0.4007 MDPQLLQVVALLTMIAFGGTSWTIEACSPIDLEALMSFKNGIQKDTSGRLAKWIGASCCKWEGIVCENATSRVTQINLPGFISTDTDLFQTQMIGRISPSITLLASLEIIDLGGLVGLSGAIPHTIGLHLPKLQKLYLYGNNLTGPIPESIGQFPNLQELALQENQLWGSIPMSLGSLKSLKRLLLYSNKFSGIIPDSLGNLINLIELDAHDNALVGNIPNSVGEMKALTKLDLSNNLLSGKMPSSLTNLTAISVLYLNTNSLEGTMVFPSRPGEMSSLGFLRLHNNLLVGNIHSNIGYLVSLQRLSLSNNKLEGVLPSSLGNLVSLTELYLSGNFLSHQIPKSVGQLSRLIMLNISRNLIEGPLPQEISSLQNLQTLDLSFNHLKLSAIPKWMANMSSLSNIYLAGVGIQGQIPDFFQTTNSPIQELDLSVNILSGSIPSWIGSLSQLYLLNLSRNSLYSDIPDSFRNLQDLGVLDLHSNRLTGSIAPVFDIEQGIFGGSLKFVDLSENNFSNGIEEIGGGQCSIQFLNLSHNHLEGRLPNSIGRLNSLNSLDLSFNELGSNLPEMLANLTSLEILKLQENHFTGKIPNGFLKLLWLKELNVSNNHLEGEIPEGKPWIEFPQSSYSGNKGLCGKPLGPCKL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02629 642 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Phco8g02629 642 SUPERFAMILY L domain-like 269 615 - -
Phco8g02629 642 SUPERFAMILY L domain-like 54 385 - -
Phco8g02629 642 SMART LRR_typ_2 547 570 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 446 469 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 324 348 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 178 201 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 130 154 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 300 323 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 226 249 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 571 595 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 372 397 IPR003591 -
Phco8g02629 642 SMART LRR_typ_2 470 500 IPR003591 -
Phco8g02629 642 Gene3D Ribonuclease Inhibitor 317 422 IPR032675 -
Phco8g02629 642 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 83 336 - -
Phco8g02629 642 Pfam Leucine rich repeat 425 483 IPR001611 GO:0005515
Phco8g02629 642 Pfam Leucine rich repeat 282 335 IPR001611 GO:0005515
Phco8g02629 642 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 364 642 - -
Phco8g02629 642 Gene3D Ribonuclease Inhibitor 525 640 IPR032675 -
Phco8g02629 642 Pfam Leucine Rich repeat 372 385 IPR001611 GO:0005515
Phco8g02629 642 Gene3D Ribonuclease Inhibitor 26 316 IPR032675 -
Phco8g02629 642 SMART LRR_sd22_2 324 345 - -
Phco8g02629 642 SMART LRR_sd22_2 130 159 - -
Phco8g02629 642 SMART LRR_sd22_2 226 252 - -
Phco8g02629 642 SMART LRR_sd22_2 547 566 - -
Phco8g02629 642 SMART LRR_sd22_2 300 318 - -
Phco8g02629 642 SMART LRR_sd22_2 372 392 - -
Phco8g02629 642 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515
Phco8g02629 642 Pfam Leucine Rich Repeat 132 152 IPR001611 GO:0005515
Phco8g02629 642 Pfam Leucine Rich Repeat 526 546 IPR001611 GO:0005515
Phco8g02629 642 Gene3D Ribonuclease Inhibitor 423 522 IPR032675 -
Phco8g02629 642 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 389 635 - -
Phco8g02629 642 PRINTS Leucine-rich repeat signature 372 385 - -
Phco8g02629 642 PRINTS Leucine-rich repeat signature 229 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02629 Phco-Chr8 38348344 38350272 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02629 8 38348344 38350272 Phco8g02629 8 38348344 38350272 ECH
Phco4g01561 4 14700038 14701969 Phco8g02629 8 38348344 38350272 PCT