Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01561 ATGGGCTATCAGCTACTACAGATAGTTACACTGCTGACAGTGATAGCATTTGGAGGAGCATTTAGGAAAGTAACAGGAGAATGCAGTTCAGATGATTTGGAAGGTTTAATGGCCTTCAAGAATGGCATTCAGATGGATACATCTGGCCGGTTGGCAAAGTGGGTTGGCAGGAACTGCTGTGAATGGGAAGGTGTTGTCTGTGACAATGCAACCACTAGAGTGACACAGATCCTTCTCCCAGGGCTCATTGAAAAAGATTTGGTTCAAACACAAATGGTGGGTCAACTTTCTCCTTCCATAACACTCCTCACCTCTCTTGAAATCCTTGATCTCGGTGGCTTAGTAGGCCTCAGTGGAACAATTCCCCGAACAATTGGGTTGCAAATGCCAAAGCTCCAAAAGCTTTATCTTTATGGCAACAATTTAACTGGCCCAGTACCTGAAAGCATTGGTAATTTTCCAAACCTCCAGGAACTGGCACTGCATGAAAATAGGATATCTGGGTCAATCCCTTCTAGCCTTGGAAGCTTAAGAAACCTCAAAAGGCTGCTACTTTACTCTAACCAAATTTCAGGTACAATACCCTTCTCACTTGGGACTTTGACCAATTTGGTAGAGTTGGATGTTCATGACAATGCTCTTATAGGTCATATACCCAACAGCATTGGTCAGATGCTGGCTTTGGAGAAGCTTGATCTTTCAAGCAATATGCTAAGTGGAGGAATACCTTCTTCACTAACAAATTTAACTGCCATTTCAGTTTTGTATTTTGACACCAACTATCTTGAGGGAACCATCCCATTTCCCTCGAGACCTGGTGAAATGCCTTCTCTGGGCTTTTTAAGACTCCACAATAACCACCTGAGTGGAAACATACCTCCTAGTTTTGGCTACCTGGTTTCTCTTCAAAGAGTTTCAGTATCAAACAACAAACTTGAAGGAGCATTGCCTTCTAGTTTGGGCAACTTGCATTCTTTGACAGAGCTTTACCTCAGTGACAACTCCTTCTCTGGCCAAATACCAAAATCAGTAGGCCAACTCTCTCAGCTCATAATGTTGAACATTTCCAATAATTTGATTGAATGGCCATTGCCTCAGGAGATGTCTTCCCTTCAAAACCTTCAGACACTTGATCTATCTTTCAACCCTTTGAACCTCTCTTCCATTCCATCATGGCTAACAAGTCTTTCATCTCTTTCCCGCATTTACCTCGCAGGCTGTGGCATCAAGGGCCAAATTCCAGACTTACTGCAAACAACACAGAGTCCAATACAGGAACTGGACTTATCAGGGAACCTTCTCAGTGGACCAATACCATCATGGTTTGGATCCCTCAGTCAGCTGTACTTGTTAAACCTCTCTAGTAATTCACTTGATTTACACCTACCTGATTCCCTCACAAACTTGCCTGATCTTGGTGTTCTTGATCTTCACTCAAATAAGTTAACAGGCTCCATAACTGGACTATTTAACACTGATCAACGAGGTACTACTGGGGGATCACTAACATATATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTAGAGGCAATTGGTGTGGGAGAACAGTTAAACATTCGGTACCTAAATTTGTCTCATAACCTTCTAAAGGGTACATTGTCAGGTTCCCTTGGGAGGCTGAACTCCATTCACAGTTTGGATTTGAGCTTCAATGAATTAGCTTCCAACTTGCCAGAAGTTCTGGCAAAGTTGACCTTGTTGGAGAGTCTGAAGCTGCAAAGTAATCACTTCAGTGGAAACATACCCAATGGATTTCTCAAGCTGAGAAAGTTGAAGGAATTGGACTTATCAGATAATGTACTTGAAGGGGAAATTCCAGAGGGTAAACCTCTAATTGACTTTCCTGGGAGTACTTATTCTGGAAATAAAGGTTTGTGCGGAAAGCCTCTTAGTCCCTGTAAACTTTGA 1932 0.4239 MGYQLLQIVTLLTVIAFGGAFRKVTGECSSDDLEGLMAFKNGIQMDTSGRLAKWVGRNCCEWEGVVCDNATTRVTQILLPGLIEKDLVQTQMVGQLSPSITLLTSLEILDLGGLVGLSGTIPRTIGLQMPKLQKLYLYGNNLTGPVPESIGNFPNLQELALHENRISGSIPSSLGSLRNLKRLLLYSNQISGTIPFSLGTLTNLVELDVHDNALIGHIPNSIGQMLALEKLDLSSNMLSGGIPSSLTNLTAISVLYFDTNYLEGTIPFPSRPGEMPSLGFLRLHNNHLSGNIPPSFGYLVSLQRVSVSNNKLEGALPSSLGNLHSLTELYLSDNSFSGQIPKSVGQLSQLIMLNISNNLIEWPLPQEMSSLQNLQTLDLSFNPLNLSSIPSWLTSLSSLSRIYLAGCGIKGQIPDLLQTTQSPIQELDLSGNLLSGPIPSWFGSLSQLYLLNLSSNSLDLHLPDSLTNLPDLGVLDLHSNKLTGSITGLFNTDQRGTTGGSLTYIDLSDNNFSSGVEAIGVGEQLNIRYLNLSHNLLKGTLSGSLGRLNSIHSLDLSFNELASNLPEVLAKLTLLESLKLQSNHFSGNIPNGFLKLRKLKELDLSDNVLEGEIPEGKPLIDFPGSTYSGNKGLCGKPLSPCKL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01561 643 FunFam Leucine-rich repeat receptor protein kinase EMS1 270 361 - -
Phco4g01561 643 Pfam Leucine rich repeat 280 335 IPR001611 GO:0005515
Phco4g01561 643 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Phco4g01561 643 Pfam Leucine rich repeat 424 482 IPR001611 GO:0005515
Phco4g01561 643 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 363 643 - -
Phco4g01561 643 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 8 345 - -
Phco4g01561 643 SUPERFAMILY L domain-like 423 639 - -
Phco4g01561 643 Gene3D Ribonuclease Inhibitor 318 643 IPR032675 -
Phco4g01561 643 SMART LRR_typ_2 371 396 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 275 298 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 596 618 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 572 595 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 129 152 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 469 492 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 153 177 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 323 347 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 548 571 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 201 225 IPR003591 -
Phco4g01561 643 SMART LRR_typ_2 299 322 IPR003591 -
Phco4g01561 643 Pfam Leucine Rich Repeat 228 249 IPR001611 GO:0005515
Phco4g01561 643 Pfam Leucine Rich Repeat 373 391 IPR001611 GO:0005515
Phco4g01561 643 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 78 269 - -
Phco4g01561 643 Gene3D Ribonuclease Inhibitor 27 317 IPR032675 -
Phco4g01561 643 SMART LRR_sd22_2 177 198 - -
Phco4g01561 643 SMART LRR_sd22_2 225 251 - -
Phco4g01561 643 SMART LRR_sd22_2 129 155 - -
Phco4g01561 643 SMART LRR_sd22_2 323 349 - -
Phco4g01561 643 SMART LRR_sd22_2 201 220 - -
Phco4g01561 643 SMART LRR_sd22_2 596 619 - -
Phco4g01561 643 SMART LRR_sd22_2 371 388 - -
Phco4g01561 643 SMART LRR_sd22_2 548 567 - -
Phco4g01561 643 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Phco4g01561 643 PRINTS Leucine-rich repeat signature 371 384 - -
Phco4g01561 643 PRINTS Leucine-rich repeat signature 228 241 - -
Phco4g01561 643 SUPERFAMILY RNI-like 111 485 - -
Phco4g01561 643 ProSiteProfiles Leucine-rich repeat profile. 373 397 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01561 Phco-Chr4 14700038 14701969 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01561 4 14700038 14701969 Phco8g02629 8 38348344 38350272 PCT