Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02564 ATGAATAATAAGTACCTTTCACTCACTCACCCACTTCATACCAATTTTTTTGAAAGGTTAGGGTTTGGGTCTCAACAACTCTTTAAAGCACAGTCTCACATTCATTATTGTGGTTCTTCTCTTTCTCTCTTCTCTATTTCTTTCTCTATCTTTTCTCTCTGTGCTTTTCGATTGCTGAATTTGAGGTTGAAGAAGATGATGCAGCCAGGACCCGGCATGGCCCAACAACCCAACCAACAATACCCACAACAGCAGCAACAGCAACAACAACCCTACATGATGATGCCCCCTCAGCCGCAGCCCCCTCAGATGTGGGCTCCATCGGCCCAGCCTCCACCGCAATCGGTGGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGTGATTTGCAATACTGGATGGACGAGAATTACCTCTATACGTGTTTCGCGCACACAGGCGAGGTGGCTTCAGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACCAGTCGTGCTGGTGCTGAGAGAATCCTTCAAACATACAACGGAACCATTATGCCAAACGGTGGTCAGAACTTCAGATTGAACTGGGCTTCTTTTAGTGCCGGTGATAGGCGTCATGACGATAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAAGAGACATTTAGGGCACGGTATCCCTCCGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTCACTGGTCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACTAGGCCCATGCGAATTGGACCCGCCTCTAATAAAAACCCTAGCACTCAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACGACGATTTTTGTTGGCAATTTGGATCCTAATGTCACCGATGACCATTTGAGACAAGTTTTTGGACAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGGAGCTGTGCAGAAGAGGCTCTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCCCAACCAGATGCAAATCAGTGGAATGGCAGTGGTGGTTACTATGGATATGCTGCGCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAAGACCCCAATATGTATGGCAGTTATCCGGGCTATGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATATAGCTAA 1392 0.4684 MNNKYLSLTHPLHTNFFERLGFGSQQLFKAQSHIHYCGSSLSLFSISFSIFSLCAFRLLNLRLKKMMQPGPGMAQQPNQQYPQQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02564 463 MobiDBLite consensus disorder prediction 69 122 - -
Phco8g02564 463 SUPERFAMILY RNA-binding domain, RBD 312 426 IPR035979 GO:0003676
Phco8g02564 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 400 IPR000504 GO:0003723
Phco8g02564 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 300 IPR000504 GO:0003723
Phco8g02564 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 208 IPR000504 GO:0003723
Phco8g02564 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 195 IPR000504 GO:0003723
Phco8g02564 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 393 IPR000504 GO:0003723
Phco8g02564 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 286 IPR000504 GO:0003723
Phco8g02564 463 MobiDBLite consensus disorder prediction 292 327 - -
Phco8g02564 463 MobiDBLite consensus disorder prediction 295 327 - -
Phco8g02564 463 CDD RRM1_SECp43_like 129 209 - -
Phco8g02564 463 Gene3D - 68 212 IPR012677 -
Phco8g02564 463 FunFam Polyadenylate-binding protein RBP45C 213 305 - -
Phco8g02564 463 SUPERFAMILY RNA-binding domain, RBD 91 209 IPR035979 GO:0003676
Phco8g02564 463 CDD RRM2_SECp43_like 220 299 - -
Phco8g02564 463 Gene3D - 213 307 IPR012677 -
Phco8g02564 463 MobiDBLite consensus disorder prediction 443 463 - -
Phco8g02564 463 SUPERFAMILY RNA-binding domain, RBD 205 308 IPR035979 GO:0003676
Phco8g02564 463 FunFam Polyadenylate-binding protein RBP45 70 212 - -
Phco8g02564 463 MobiDBLite consensus disorder prediction 449 463 - -
Phco8g02564 463 MobiDBLite consensus disorder prediction 72 93 - -
Phco8g02564 463 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 119 404 - -
Phco8g02564 463 SMART rrm1_1 222 296 IPR000504 GO:0003723
Phco8g02564 463 SMART rrm1_1 129 204 IPR000504 GO:0003723
Phco8g02564 463 SMART rrm1_1 329 396 IPR000504 GO:0003723
Phco8g02564 463 MobiDBLite consensus disorder prediction 94 119 - -
Phco8g02564 463 FunFam Polyadenylate-binding protein RBP45C 306 434 - -
Phco8g02564 463 Gene3D - 308 433 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02564 Phco-Chr8 36570075 36574349 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02564 8 36570075 36574349 Phco11g00799 11 5815649 5819342 PCT