Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00799 ATGCAGCAGCCAGGACTCGGCATGGCTCCTCCCACCATGGGGCAACAGCCACCGCAACAGTATCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCTATGTGGGCCCCTTCCACCCAGCCTTCGTCGCAGCAGCAGCCCACCAGCGTTGACGAGGTCCGGACCCTATGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCATCTACGGGCGAGGTTACATCTGTTAAAGTTATTCGAAATAAGCAAACTAGTCAATCAGAAGGTTATGGGTTTATTGAATTTAATAGTCGTGCTGCGGCTGAAAGAATTCTGCAAACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCACGATGATTCTCCAGATTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTCAGGGCCCGTTACAACTCAGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACAAAGGGTTATGGCTTTGTTAGGTTCGCAGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCTAAAGCAACGTATCAGAATTCTCAAGCTCAAGGCACACAGAACGAGAATGATCCTAATAATACAACCATTTTTGTGGGCAATTTGGATGCTAATGTCAGCGATGATCATTTGAGGCAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATACCAGCTGGCAAGCGATGTGGTTTTGTCCAATTCGCTGACAGGAGCTGTGCTGAAGAGGCACTGCGAATGCTAAATGGGACACTATTGGGTGGACAAAACGTTCGTCTGTCATGGGGACGCAGTCCTTCAAACAAACAGGGTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGGATACTATGGGTATGCGCAAGGTTATGAAAACTATGGTTATGCTCCTGCTGGACAGGATCCCAACGTGTATGGCAGTTATCCGGGGTATCCTGGTTACCAACCTCCTCAGCAACAGCAGCAAATAGGATATAGCTGA 1197 0.4896 MQQPGLGMAPPTMGQQPPQQYQQPPPQQQPYVMMPPQPQAPPPMWAPSTQPSSQQQPTSVDEVRTLWIGDLQYWMDENYLYTCFASTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKATYQNSQAQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQGQADPNQWNGGGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPGYQPPQQQQQIGYS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00799 398 SMART rrm1_1 65 140 IPR000504 GO:0003723
Phco11g00799 398 SMART rrm1_1 158 232 IPR000504 GO:0003723
Phco11g00799 398 SMART rrm1_1 265 332 IPR000504 GO:0003723
Phco11g00799 398 Gene3D - 9 148 IPR012677 -
Phco11g00799 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 336 IPR000504 GO:0003723
Phco11g00799 398 FunFam Polyadenylate-binding protein RBP45C 149 240 - -
Phco11g00799 398 Gene3D - 149 244 IPR012677 -
Phco11g00799 398 MobiDBLite consensus disorder prediction 17 48 - -
Phco11g00799 398 FunFam Polyadenylate-binding protein RBP45C 241 369 - -
Phco11g00799 398 SUPERFAMILY RNA-binding domain, RBD 253 361 IPR035979 GO:0003676
Phco11g00799 398 MobiDBLite consensus disorder prediction 378 398 - -
Phco11g00799 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 144 IPR000504 GO:0003723
Phco11g00799 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 329 IPR000504 GO:0003723
Phco11g00799 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 222 IPR000504 GO:0003723
Phco11g00799 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 131 IPR000504 GO:0003723
Phco11g00799 398 CDD RRM1_SECp43_like 65 145 - -
Phco11g00799 398 CDD RRM2_SECp43_like 156 235 - -
Phco11g00799 398 SUPERFAMILY RNA-binding domain, RBD 27 144 IPR035979 GO:0003676
Phco11g00799 398 SUPERFAMILY RNA-binding domain, RBD 149 245 IPR035979 GO:0003676
Phco11g00799 398 Gene3D - 245 345 IPR012677 -
Phco11g00799 398 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 55 340 - -
Phco11g00799 398 MobiDBLite consensus disorder prediction 228 262 - -
Phco11g00799 398 MobiDBLite consensus disorder prediction 231 262 - -
Phco11g00799 398 MobiDBLite consensus disorder prediction 1 60 - -
Phco11g00799 398 FunFam Polyadenylate-binding protein RBP45 10 148 - -
Phco11g00799 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 236 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00799 Phco-Chr11 5815649 5819342 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00799 11 5815649 5819342 Phco11g00799 11 5815649 5819342 ECH
Phco8g02564 8 36570075 36574349 Phco11g00799 11 5815649 5819342 PCT