Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02232 ATGCTTGCACAACAGAAATCCCCAAAGGCATACCCGACACTTCCCCAGGTATTGGAGGAAGTAAAGAGAATGACAGACATAGGGTTCCCTATATCAGCCATGAGCCTTGTGGGGTACCTAAAAAACTTGACCTTAGTTGTGTGCATGGGAAGGTTGGGAAGCCTGGAGTTAGCTGGAGGTTCTTTGGCCATAGGCTTCACCAACATAACTGGTTACTCTGTCCTCTCAGGTCTAGCCATGGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTAGAAACTTCTCCTTACTCTCTCTAACTTTGCAGAGAACAATTCTCATGTTACTGCTGTTTTCTCTCCCCATTTCTCTTCTGTGGCTCAACCTCGAATCTATCATGCTTTTCCTTCGCCAGAATCCAGACATAACCCGTGTAGCAACCCTCTATTGCCGCTTCGCCATCCCAGACCTCATAGTCAATAGCTTCCTTCACCCTCTTCGCATCTATCTACGCAGCAAAGGAACAACTTGGCCACTGTTGTGGTGCACTTTACTTTCCATTCTTCTACACCTTCCCACCCTCACCTTTTTAACCTTCAAACTCCACCTTGGCGTGCCGGGAATCGCTGTTTCATCCTTTGTTGCCAATTTTAACAACCTTTTTTTCCTTCTTCTGTACATGTTCTATACACGTGTTCCCAAGGAGTCCTTACACGTGCCATTACTACTGCCTCGTACCATTTCCAATAATAATTTGATGACATGCAGAAGCAGTTGTAGTACTCTTGCCATGGAATGGGGTGTGCTACTGAAATTCTCAATACAAAGTTGTCTAGCTGTTTGCTTGGAGTGGTGGTGGTACGAATTGATGACAATTTCCGCAGGCTACCTTCACAATCCTCGTGTTGCTCTAGCCACGGCTGGCATTGTGATACAAACCACATCTCTTTTGTACACTTTGCCAACAGCACTAAGTGCATCGGTGTCAACGAGAGTAGGGAATGAACTAGGGGCGGGGCAAGCTGAAAGAGCGAGTTTGGCAACGGTGGTAGCAATAGGATTAGCACTTGCAAGCTCAATTTTTGGGTTATTGTGGACCACTATGGGAAGAGAAAGGTGGGGGAGAGTGTTCACTAGTGACGGTGAGGTGCTGCAATTGAGCATGGCAGTGTTACCTATAATTGGACTTTGTGAATTAGCCAATTGTCCACAAACCACAAGCTGTGGAATCCTCAGAGGAAGTGCTAGGCCTGGTGTTGGGGCAGTTATAAACTTTTGCTCCTTTTATTTGGTGGGAGCACCAGTAGCCATTGTTTTGGCCTTCGTTTGGAAACTTGGGATGGTGGGGCTGTGTTATGGGTTGTTGGCAGCACAGATCGCATGTGTGGTGTCAATTTTCATTGTCGTGTACAAAACTGATTGGGAAAGGGAGTCATTGAAAGCCAGAAGCTTGGTGGGAAAGGGTTTATGTGGCACTTTCGCATTTCATCAGGACCAAATCACGATCAAATGTGAAGAAGATGTTGTCTTTCTCAAAGAGGACAACTCAGAAAAGTGA 1539 0.4639 MLAQQKSPKAYPTLPQVLEEVKRMTDIGFPISAMSLVGYLKNLTLVVCMGRLGSLELAGGSLAIGFTNITGYSVLSGLAMGMEPLCTQAFGSRNFSLLSLTLQRTILMLLLFSLPISLLWLNLESIMLFLRQNPDITRVATLYCRFAIPDLIVNSFLHPLRIYLRSKGTTWPLLWCTLLSILLHLPTLTFLTFKLHLGVPGIAVSSFVANFNNLFFLLLYMFYTRVPKESLHVPLLLPRTISNNNLMTCRSSCSTLAMEWGVLLKFSIQSCLAVCLEWWWYELMTISAGYLHNPRVALATAGIVIQTTSLLYTLPTALSASVSTRVGNELGAGQAERASLATVVAIGLALASSIFGLLWTTMGRERWGRVFTSDGEVLQLSMAVLPIIGLCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLAAQIACVVSIFIVVYKTDWERESLKARSLVGKGLCGTFAFHQDQITIKCEEDVVFLKEDNSEK 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02232 512 CDD MATE_eukaryotic 20 474 IPR045069 GO:0042910|GO:1990961
Phco8g02232 512 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 468 - -
Phco8g02232 512 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco8g02232 512 Pfam MatE 270 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco8g02232 512 NCBIfam MATE family efflux transporter 40 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02232 Phco-Chr8 23997644 23999662 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02232 8 23997644 23999662 Phco8g02232 8 23997644 23999662 ECH
Phco8g02232 8 23997644 23999662 Phco7g02954 7 48366391 48368135 PCT