Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02167 ATGAAATTAAAGAGATCGAACCCTAGTCGTGAAGATCCGGTTGCGCTAGGGTTTTCTGCGGAACAAAACTTTTGGGAAGAATGGATAGCTATAGCTATATATAATATATGTTACCTCCTTCTGAGGCAAAACCCTAAGACTTTCACTGAAATGACGATAGTACCCTTTGCTTTTCGGAAGTGGCGTGGCTTACGGTTAGCTTCCCTTCTCCTATTCGATCTGGGACTTTTCTTTTCTCCCCAACACCGACACCACACCTACATCTGCAATTCAAGCATGTTCCTCTTCGACTGGTTCTATGGCATTCTAGCTTCCCTCGGCCTTTGGCAGAAAGAAGCCAAGATTCTCTTCCTCGGTCTCGATAATGCTGGAAAGACCACCCTCCTTCATATGCTCAAAGACGAGAGATTAGTTCAGCACCAGCCAACCCAACACCCCACTTCGGAGGAATTGAGCATTGGGAAGATCAAGTTTAAGGCTTTTGATTTGGGGGGTCATCAAGTTGCCCGTAGAGTCTGGAAAGACTATTATGCCAAGGTGGACGCAGTAGTTTACCTGGTTGATGCCTATGACAAAGAGAGGTTCACGGAGTCGAAGAAGGAGCTTGATGCCTTGCTTTCGGATGAATCATTGGCAAATGTTCCATTTCTTGTGCTAGGGAACAAGATTGACATTCCATATGCTGCATCAGAAGAAGAGCTACGTTATCATCTGGGGCTGACCAATTTCACCACAGGGAAGGGGAAGGTCAACCTCACAGAGTCCAACCTTCGGCCTCTGGAAGTGTTCATGTGCAGCATTGTCCGCAAAATGGGATATGGAGATGGCTTCCAGTGGGTCTCTCAATATATTAAGTAG 858 0.4615 MKLKRSNPSREDPVALGFSAEQNFWEEWIAIAIYNICYLLLRQNPKTFTEMTIVPFAFRKWRGLRLASLLLFDLGLFFSPQHRHHTYICNSSMFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDAYDKERFTESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLTESNLRPLEVFMCSIVRKMGYGDGFQWVSQYIK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02167 285 PANTHER RE74312P 93 285 IPR006687 GO:0005525|GO:0006886
Phco8g02167 285 Pfam ADP-ribosylation factor family 100 284 IPR006689 GO:0003924|GO:0005525
Phco8g02167 285 ProSiteProfiles small GTPase Arf family profile. 106 284 - -
Phco8g02167 285 NCBIfam small GTP-binding protein domain 111 230 IPR005225 GO:0005525
Phco8g02167 285 SMART arf_sub_2 96 261 - -
Phco8g02167 285 SMART sar_sub_1 96 284 IPR006689 GO:0003924|GO:0005525
Phco8g02167 285 ProSiteProfiles small GTPase SAR1 family profile. 106 284 - -
Phco8g02167 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 284 IPR027417 -
Phco8g02167 285 CDD Sar1 94 284 - -
Phco8g02167 285 FunFam GTP-binding protein SAR1A 93 285 - -
Phco8g02167 285 Gene3D - 89 285 IPR027417 -
Phco8g02167 285 PRINTS GTP-binding SAR1 protein signature 214 235 IPR006689 GO:0003924|GO:0005525
Phco8g02167 285 PRINTS GTP-binding SAR1 protein signature 258 282 IPR006689 GO:0003924|GO:0005525
Phco8g02167 285 PRINTS GTP-binding SAR1 protein signature 142 166 IPR006689 GO:0003924|GO:0005525
Phco8g02167 285 PRINTS GTP-binding SAR1 protein signature 114 137 IPR006689 GO:0003924|GO:0005525
Phco8g02167 285 PRINTS GTP-binding SAR1 protein signature 169 194 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02167 Phco-Chr8 23231612 23234836 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02167 8 23231612 23234836 Phco8g02167 8 23231612 23234836 ECH
Phco8g02167 8 23231612 23234836 Phco2g02578 2 55602528 55608662 ECH
Phco8g02167 8 23231612 23234836 Phco7g03003 7 48730125 48732142 PCT