Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02578 ATGTTTTTGGTGGATTGGTTTTATGGGATTCTAGCGTCGCTTGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTGGGCCTCGATAACGCTGGCAAAACCACCCTGCTCCACATGCTCAAAGATGAGAGACTAGTCCAGCATCAACCTACCCAGTATCCTACGTCAGAGGAGTTGAGTATTGGAAAGATCAAGTTCAAAGCTTTTGATCTAGGGGGTCATCAGATTGCTCGAAGAGTGTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTGTACTTGGTTGATGCATATGACAAGGAAAGATTTGCTGAGTCAAAAAAAGAGCTGGATGCTCTACTCTCTGATGAATCTTTAGTCAGTGTCCCTTTTCTTGTCCTTGGGAACAAAATTGATATTCCATATGCTGCCTCAGAAGAAGAGCTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAAGGTAAGGTAAATTTGGCCGACTCAAATGTCCGTGCCATGGAGGTGTTCATGTGCAGTATTGTGAAGAAAATGGGCTATGGGGAAGGTTTCAAATGGCTTTCCCAGTACATCAAATAG 582 0.4519 MFLVDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLVSVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLADSNVRAMEVFMCSIVKKMGYGEGFKWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02578 193 SMART arf_sub_2 4 193 - -
Phco2g02578 193 FunFam GTP-binding protein SAR1A 1 193 - -
Phco2g02578 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Phco2g02578 193 CDD Sar1 2 192 - -
Phco2g02578 193 NCBIfam small GTP-binding protein domain 19 138 IPR005225 GO:0005525
Phco2g02578 193 Gene3D - 1 193 IPR027417 -
Phco2g02578 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Phco2g02578 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Phco2g02578 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Phco2g02578 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Phco2g02578 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Phco2g02578 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Phco2g02578 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Phco2g02578 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Phco2g02578 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Phco2g02578 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02578 Phco-Chr2 55602528 55608662 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02167 8 23231612 23234836 Phco2g02578 2 55602528 55608662 ECH
Phco7g03003 7 48730125 48732142 Phco2g02578 2 55602528 55608662 ECH
Phco2g02578 2 55602528 55608662 Phco2g02578 2 55602528 55608662 ECH