Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02146 ATGCCGAGGATCTCCAACCTCAAAGAAGAAGGGAGTGTGATGAGTTTTCGAAGAAAGCTCTCTGAAAACCGGAATTGGAGGTGGCTGAAAAAGGCACATGAAAATCTACAACATCACACGAGATCGAGATTGGATTTCTACAACCAACTCACTCCATTCAGATCTATCTGTTTCTTCGTCATGGCCACTGGACAACTATTCTCGCGTACTACACAAGCTCTGTTTTACAACTACAAGCAACTTCCCATCCAGCGGATGCTTGACTTTGACTTTCTTTGTGGTAGAGAAACACCATCAGTTGCTGGAATAATTAATCCTGGTTCCGAGGGATTTCAAAAGCTCTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCTGATATTGAAGCTGCTTGTGCTGCACACCCTACTGCTGATGTATTCATCAATTTTGCATCGTTTAGAAGTGCGGCTGCATCATCCATGACTGCTTTAAAGCAGCCGACAATTAGAGTTATTGCTATTATTGCTGAAGGTGTACCTGAGTCAGACACTAAGCAATTGATAGCGTATGCTCGGGCAAACAATAAGGTTGTTATTGGTCCAGCCACTGTCGGAGGAATTCAAGCTGGTGGTTTTAAGATAGGTGACACTGCTGGAACAATTGACAACATAATTCAGTGCAAGCTCTACCGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAGTTATACAACAGTATTGCCCGTGTGACTGATGGAATTTATGAAGGCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTCTCTGACCATGTTTTGCGGTTTAGCAACATACCACAGGTTAAAATGATAGTAGTACTTGGGGAACTTGGTGGGCGAGATGAGTATTCTCTGGTGGAAGCCCTAAAACAAGGGAAAGTGACAAAACCAGTTGTTGCCTGGGTTAGCGGAACCTGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCAAAAAGTGGCGGTGAGATGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAAAGAAGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTTTTGAAGTTGCAATAAAGGAAACATTTGACAAATTGGTTGAAGAAGGGAGTATCACACCCATTAAAGAGTTTACTCCTCCACCAATCCCCGAAGACCTAAACATTGCAATTAAGAGTGGAAAAGTACGTTCTCCAACTCACATTATTTCCACCATCTCTGATGACAGAGGTGAGGAACCCTGCTATGCTGGGGTACCAATGTCTACCATTATTGAAAATGGTTATGGTGTGGGGGATGTTATCTCTCTTTTGTGGTTCAAACGTAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGTATCATGCTGTGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGAGCTGGGAAAGATCTTGTCTCCTGTCTTGTATCGGGCTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTATTTCAAGGATGCTTATGACAGGAGTCTTACACCTTATGAATTTGTTGAATGTATGAAGAAGAAGGGCATCCGTGTTCCTGGAATAGGGCACAGAATCAAGAATAGGGATAACAAAGATAAGAGAGTCGAGCTGCTACAAAAGTTTGCACGCACACATTTTCCATCTGTGAAATACATGGAGTATGCTGTTGAAGTTGAAAACTACACCCTCACCAAGGCAAATAACCTAGTTCTAAACGTAGATGGTGCAATTGGGTCACTTTTCTTGGATCTTCTAGCTGGTAGCGGAATGTTCACTAAACAAGAGGTTGACGAAATTGTGGGGATTGGCTATCTGAATGGGCTTTTTGTTTTGGCACGCTCCATTGGTCTGATCGGGCATACCTTTGACCAGAAGAGATTGAAACAACCACTCTATCGTCACCCATGGGAAGATGTTCTGTACACAAAATGA 2007 0.4355 MPRISNLKEEGSVMSFRRKLSENRNWRWLKKAHENLQHHTRSRLDFYNQLTPFRSICFFVMATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHADIEAACAAHPTADVFINFASFRSAAASSMTALKQPTIRVIAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGGFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFSNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALKEAGAVVPTSYEAFEVAIKETFDKLVEEGSITPIKEFTPPPIPEDLNIAIKSGKVRSPTHIISTISDDRGEEPCYAGVPMSTIIENGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNSIVTARAGKDLVSCLVSGLLTIGPRFGGAIDDAARYFKDAYDRSLTPYEFVECMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVEVENYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEVDEIVGIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02146 668 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 319 335 IPR017440 -
Phco8g02146 668 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 234 263 IPR033847 -
Phco8g02146 668 Pfam CoA-ligase 234 358 IPR005811 GO:0003824
Phco8g02146 668 PANTHER ATP-CITRATE SYNTHASE 63 667 IPR002020 GO:0006099|GO:0046912
Phco8g02146 668 Gene3D - 510 607 IPR016143 -
Phco8g02146 668 FunFam ATP-citrate synthase subunit 198 383 - -
Phco8g02146 668 Gene3D - 198 383 IPR016102 -
Phco8g02146 668 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 228 253 IPR017866 -
Phco8g02146 668 FunFam ATP-citrate synthase subunit 1 515 608 - -
Phco8g02146 668 Pfam Citrate synthase, C-terminal domain 458 657 IPR002020 GO:0006099|GO:0046912
Phco8g02146 668 CDD CCL_ACL-C 429 666 - -
Phco8g02146 668 Gene3D - 62 197 - -
Phco8g02146 668 SUPERFAMILY Citrate synthase 194 666 IPR036969 GO:0046912
Phco8g02146 668 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 68 196 IPR036291 -
Phco8g02146 668 FunFam ATP-citrate synthase beta chain protein 62 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02146 Phco-Chr8 23013400 23020554 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02146 8 23013400 23020554 Phco8g02146 8 23013400 23020554 ECH
Phco8g02146 8 23013400 23020554 Phco11g01175 11 8789140 8794978 PCT