Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01175 ATGAGGTTGTGGAATCGTTTCTTCATCATGGCCACCGGACAACTATTCTCCCGCACTACACAAGCTTTATTTTACAACTACAAGCAACTGCCCATCCAGCGGATGCTTGATTTTGACTTCCTCTGTGGCAGGGAAACCCCATCAGTTGCTGGAATAATTAATCCTGGTTCTGAGGGATTTCAGAAACTCTTCTTTGGTCAGGAGGAAATTGCCATCCCTGTTCATTCTGCCATTGAAGCAGCATGTGCTGCACATCCTACCGCTGATGTTTTCATCAACTTTGCTTCGTTTAGAAGTGCTGCAGCATCATCCATGGCTGCTTTAAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGGGTACCTGAGTCAGATACTAAGCAATTGATTGCATATGCCCGTTCAAACAATAAGGTTGTTATTGGTCCAGCCACTGTTGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGTGACACAGCTGGCACAATTGACAATATAATTCAGTGCAAGCTCTACAGGCCCGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATACAACTCTATTGCCCGTGTAACTGATGGGATTTATGAAGGCATTGCCATTGGAGGGGATGTTTTCCCCGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCCCAGGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCATTAGTGGAAGCTCTAAAACAAGGGAAAGTATCAAAACCAGTTGTTGCCTGGGTTAGTGGGACATGTGCACGACTATTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCTAAAAGTGGCGGTGAGTTAGAATCTGCTCAAGCAAAGAATCAGGCACTAAAGGATGCCGGAGCTGTTGTTCCCACATCATTTGAAGCTTTTGAAGCTTCAATTAAGGAAACATTTGACAAATTGGTTGAAGAAGGGAAGGTCACACCAGTCAAGGAAATCACTCCTCCACCAATCCCGGAAGACCTTAGCTCTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGTGAGGAGCCGTGCTATGCTGGTGTACCCATGTCTTCCATCATTGAAAAAGGTTATGGTGTTGGTGATGTTATCTCTCTTCTGTGGTTTAAACGCAGCCTTCCACGATACTGTACTCAATTTATTGAGATTTGCATCATGCTATGTGCCGACCATGGTCCTTGTGTTTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGATCTAGTTTCCAGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGTGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTTACACCTTATGAGTTTGTCGAAAGTATGAAGAAGAAGGGAATCCGTGTGCCAGGAATAGGGCATAGGATCAAGAATAGGGACAACAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGCACACATTTTCCTTCTGTTAAATACATGGAATATGCTGTTCAAGTTGAAACCTACACCCTCTCAAAGGCAAATAATTTAGTTCTTAACGTAGATGGTGCAATTGGATCGCTTTTCTTGGATCTTCTTGCCGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGCCTCTTTGTGCTGGCACGCTCCATTGGTCTAATTGGGCACACCTTTGACCAAAAGCGATTGAAGCAACCACTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGA 1854 0.4391 MRLWNRFFIMATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSAIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALKDAGAVVPTSFEAFEASIKETFDKLVEEGKVTPVKEITPPPIPEDLSSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01175 617 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 268 284 IPR017440 -
Phco11g01175 617 FunFam ATP-citrate synthase subunit 1 464 557 - -
Phco11g01175 617 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 183 212 IPR033847 -
Phco11g01175 617 SUPERFAMILY Citrate synthase 139 613 IPR036969 GO:0046912
Phco11g01175 617 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 145 IPR036291 -
Phco11g01175 617 Gene3D - 147 332 IPR016102 -
Phco11g01175 617 CDD CCL_ACL-C 378 615 - -
Phco11g01175 617 Pfam CoA-ligase 183 307 IPR005811 GO:0003824
Phco11g01175 617 Gene3D - 11 146 - -
Phco11g01175 617 PANTHER ATP-CITRATE SYNTHASE 12 616 IPR002020 GO:0006099|GO:0046912
Phco11g01175 617 FunFam ATP-citrate synthase beta chain protein 11 146 - -
Phco11g01175 617 Pfam Citrate synthase, C-terminal domain 408 607 IPR002020 GO:0006099|GO:0046912
Phco11g01175 617 FunFam ATP-citrate synthase subunit 147 332 - -
Phco11g01175 617 Gene3D - 459 556 IPR016143 -
Phco11g01175 617 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 177 202 IPR017866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01175 Phco-Chr11 8789140 8794978 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01175 11 8789140 8794978 Phco11g01175 11 8789140 8794978 ECH
Phco8g02146 8 23013400 23020554 Phco11g01175 11 8789140 8794978 PCT