Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02096 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGAGGTCGCAGCTCAAAGGAAAGGGACCGTAAGAACCTTCTAGAACAGACGCGAGTTGAAAGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGAAGAAAAGCTGTCAAAACTGAACAATCTAAGTTACGAGAGCAGTTCTATGAAGCCTATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGACAATATTGATGATTTTTTAGTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTTTGTTCAGGATAATGGGGACGTTGTGAAACTTTTTGCAGGGGTGGATTACTCTTGCACCCATGCTTTGGTGAATTACCGAGTGAAGCGATTTGTACAGGCTTGTATTCGTGCTTTGCATCAGAATAGAAATCAGCTAAAAGGTCACCTTTTGTTGACTCCTGAGGAATTGAATGTATCTGCTGTTCCTTTATTGGAGGTTTTAGTACTGTTAATTGATTCCAAATTGCCATGGAGCTGTAAGATACTAGAATATCTTTTTCAAAACAATGCACTTGGCCTACTCAGAGAGGTCATTCTTACAGGGAAGGATAATGCAGAAAATTGTTTTTCTACCTGCAAGGGTTCATCATTGGAGCGTGTGCTTATGGCTGTAGTATGTCACGCTGGTCAGAAGCCATGCATCTGTTCACATATTAATCCAAGATATAGTTTTGCTTCTCAGATCATCACAATTCCTTTTTTGTGGCATCTTTTCCCTAATTTACAAGAGATTTTTGCGGCAGAGGACCTGAGCCAATTTTACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAATTTGCTACCTAAGGATATATCAAATGAATTTCCTAGCCATGCATGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCTCATCCTCTCTGTTCATTTGATATGGCAATAGACCTTGCGGCTGTCACTACACTTTTGCTGGAGGCACTCCCATCTGTGAAAACTTTCAATGGTTCTATGAGCGCTGAAGATGATATGACTGGAGATGAATTCATGGAAATAACTTTAGATAGGAAATTGGAGCAGCAAATTAATAATGCCATAAATCCTCGCTTCCTTCTACAACTGACAAACATACTATTTAAAGAGATTTCATCTGTCAATGATTCAAATTATGGACCCAAAGATAGAGAAGTTACTGCTGTTGATGCGGTTTGTGGGTTTTTGCATGTTACCTTCAGCAAGCTGCCACTTGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTGTTACGCTTTGGAATTTTATGAAGAAGTGTCATGAGAACCAAAAATGGTCATCACACCCCTCAAATGATGCACCTGGCTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTCTATGAGCAGGAGAAACCACTATCACTGGATGATATTAGGACCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATACTACATCTGCTAATTCAGTAAAATCAGTTCCGATTAGTTCAGCTAGAAAGGGGCAGTTTGTTCAGGCCATTCAACAGAGGGTTAGCATTGCGGTATCCGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCACAGTAACTTCCATGCTGATGGTGTGAATGACCTATTTATCTCTCAGGCTTTAATAGAAAATACACGAGCAAATGAAATATTGAAACAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATACTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGATCTCAGGCTGTATTTAGTAGGAATCGGTTCAGAATAAAACGAGACCATATTTTGGAAGATGCTTATAATCAAATGAGTCAATTGACAGAAGATAGTCTTCGAGGATTGATCCGGGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGCGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACGTGCTTTATCCTAATCCTGGATCGGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGATTTGCCCTCCTTGGACCCCGAATTATATCGCCATCTCTTTTTTCTCAAGCATTATAAGGGAGACATTTCGGACTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTAGGGGAAGGAACCTACGTGTCACTAATGAGAATGTTATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAGAGTTCGCATTTCTTGAGGGGATTTGAGCGACTTATTCAGAAGGATTGGATTGATATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCAGTTGACAGCTTGGATATTGTTGATCTACGGCTGCACACCAACTATGCAGGAGGTTATAATAGTGAGCATTATGTCATCGAGATGTTTTGGGAAGTTCTTAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACTGGTTGCTCTCGTGGGCCATTGCTTGGTTTTCGAAATCTTGAACCTTTGTTTTGCATACAAAGGGCTTCCAGTAATGCTGCGGAGGAATCACTTGATCGATTACCGACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGTAAGGAGCAATTGGAAACCAAACTACTGTATGCCATAAATTCCGATGCTGGCTTTGATTTAAGTTAA 3069 0.4037 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVKTEQSKLREQFYEAYGKYCQNVDRNSFGPDSDFLCQFLYFFKADNIDDFLVLVQICRLLWWFVQDNGDVVKLFAGVDYSCTHALVNYRVKRFVQACIRALHQNRNQLKGHLLLTPEELNVSAVPLLEVLVLLIDSKLPWSCKILEYLFQNNALGLLREVILTGKDNAENCFSTCKGSSLERVLMAVVCHAGQKPCICSHINPRYSFASQIITIPFLWHLFPNLQEIFAAEDLSQFYIHQMAKFGQNLINLLPKDISNEFPSHACMLGNVLETAGIALSHPLCSFDMAIDLAAVTTLLLEALPSVKTFNGSMSAEDDMTGDEFMEITLDRKLEQQINNAINPRFLLQLTNILFKEISSVNDSNYGPKDREVTAVDAVCGFLHVTFSKLPLERIMTVLAYRTELVVTLWNFMKKCHENQKWSSHPSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLDDIRTLIIILRQVLWQLLWVNHTTSANSVKSVPISSARKGQFVQAIQQRVSIAVSELLSQLQDWNNRRQFTSHSNFHADGVNDLFISQALIENTRANEILKQAPFLIPFTSRVKIYSSQLAAVRQRHGSQAVFSRNRFRIKRDHILEDAYNQMSQLTEDSLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHVLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLFFLKHYKGDISDLELYFVIVNNEYGEQTEEELLPRGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFERLIQKDWIDMFNEHELQLLISGSVDSLDIVDLRLHTNYAGGYNSEHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRNLEPLFCIQRASSNAAEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINSDAGFDLS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02096 1022 ProSiteProfiles HECT domain profile. 681 1022 IPR000569 GO:0004842
Phco8g02096 1022 CDD HECTc 660 1020 IPR000569 GO:0004842
Phco8g02096 1022 Gene3D Hect, E3 ligase catalytic domain 786 865 - -
Phco8g02096 1022 Gene3D Hect, E3 ligase catalytic domain 904 1021 - -
Phco8g02096 1022 MobiDBLite consensus disorder prediction 11 28 - -
Phco8g02096 1022 SMART hect_3 679 1022 IPR000569 GO:0004842
Phco8g02096 1022 FunFam Putative Ubiquitin-protein ligase E3C 904 1021 - -
Phco8g02096 1022 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1022 IPR044611 GO:0000209|GO:0061630
Phco8g02096 1022 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Phco8g02096 1022 FunFam Putative Ubiquitin-protein ligase E3C 786 865 - -
Phco8g02096 1022 SUPERFAMILY Hect, E3 ligase catalytic domain 650 1015 IPR035983 GO:0004842
Phco8g02096 1022 Pfam HECT-domain (ubiquitin-transferase) 717 1022 IPR000569 GO:0004842
Phco8g02096 1022 MobiDBLite consensus disorder prediction 1 28 - -
Phco8g02096 1022 Gene3D Hect, E3 ligase catalytic domains 662 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02096 Phco-Chr8 22363985 22385642 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02096 8 22363985 22385642 Phco8g02096 8 22363985 22385642 ECH
Phco8g02096 8 22363985 22385642 Phco11g01134 11 8434895 8458566 PCT