Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01134 ATGTTTTTCAGCGGTGATTCCTCTACTCGTAAGCGTGTTGATTTAGGCGGTCGCAGCTCGAAGGAACGGGACCGAAAGAATCTTCTTGAACAGACGCGATTAGAGCGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGCACTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAGTCTAAACTACGAGAGAAATTCCTTAGCATCTATGGGAAGAACTGCCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCGAGAGAGTGGGGATGTTGTCCAACTTTTTGCTGCTGAGGAATACTCGTCCAGGTGTGCTTTGGTGAACTATCGAGTGAAGCAATTTGTATATACTTGTATTCGTGCTGTACATCATAATAGGTATCACTTGAAGGACCAGCTTTTATTAACTCCGAAGGAATCTAATGCATCGGCTATTCCTTTATTGGAAGTCTTAGTATTGTTGATAGATCTCAAACTGCCATGGAGCTGTAAGATAGTAGCATGTCTGTCTAAAAACAATGCATTTAGTCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAAGGATCATCATTGGAGCGTGTGCTTACTGTTGTAATATGCCACATTGGTCAGAAGCCTTGTATCTGTTCACCTACTGATCCAGTATATAGCTTCTCATCACAGATCCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAACAGGTATTTGCAAAACAGGGCTTGGGCCAACATTACGTTCATCGGATGGCAACATGGTTACCAAATCTGATTAATTCTCTTCCCAATGATATATCAGATGAATGTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGGATTGCTTTATCTCGACCTGACTGTTCCTTTGATATGGCTATAGACCTTGCTTCTGTTACGACATTTTTGCTGGAATCATATCCATCTCCAACAAGATCTGATGGTAGAGAGAACTCTAAGATTGCTGAGGATGAAATCACTGGCGATGATGAAGTCATGGAAGTAGTTTTGGATAGGAAATTGATTCAACAAATCTCTAATGCCATAGATACTCGCTTCCTTCTTCAATTGATAAATATATTATTTAGAGATTTTTCATCTGCCAATGATTCAGATCGTGAGCCAGAGGACAGGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGATTTTTACATGTTATCTTCAACACATTGCCTCTTGAAAAGATTATGACTGTACTTGCCTACAGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAAAACAAAAAATGGTCATCCTTGTCTGAGCGGTTATCATACCTCTCTGGGGATGCACCAGGTTGGCTGTTGCCGCTTTCTGTATTCTGTCCTGTTTACAAGCATATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAACCACTATCACTGAAGGATATTAGAAGTCTTATCATTCTGCTAAGGCAGGCTCTGTGGCAGCTATTGTGGGTGAATCATACCACGTCTGCTAATTTGGTAAAATCTGTTCCAGTCAGCACAGCAATTAAAAAGCAGTTTGAAGCCATTCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTTCTGTCCCAGCTGCAAGATTGGAACAACAGACGACAGTTTACATCCCCTAGTGACTTTCATGCTGATGGGGTGAATGACTACTTTATCTCTCAGGCTGTTATAGAAAATACTCGAGCAAATGAAATTTTGAAGCAGGCTCCTTTCTTGATACCATTTACTAGCAGGGCTAAAATTTTCACTTCTCAACTAGCTGCTGCAAGGCAAAGACATGGATCTCAGGCTGTTTTTACTAGAAACCGGTTCAAAATACGTCGGAATCATATTTTGGAAGATGCCTACAATCAAATGAGTCAGCTGTCAGAAGATGACCTTCGAGGACTGATTCGTGTGGCTTTTGTTAATGAATTTGGAGTTGAAGAGGCAGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCATTCGATGTGCAATATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCATTTTCTTGGTACCCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTAAATGACTTGCCTTCCCTGGATCCAGAATTATATCGTCATCTTATTTTTCTTAAGCATTATAAGGGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTACTTCCAGGCGGAAAGAACACTCGTGTTACTAATGAGAATGTCATTACTTTTATTCATCTTGTAGCCAATCATCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAAAAGGATTGGATTGATATGTTCAATGAACATGAACTTCAGCTTTTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACAAACTATGCCGGAGGCTATCATAGTGAGCATTATGTTATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAAAACTTTTTGAAGTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCCGGTGGTAATACTTCGGAGGAAGCTCTTGACCGATTACCGACATCAGCCACCTGTATGAATTTACTAAAGCTTCCGCCTTATAAAAGTAAAGAGCAACTGGAAACCAAATTACTGTATGCCATAAATGCTGACGCTGGCTTTGATTTGAGTTAA 3096 0.3973 MFFSGDSSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFLSIYGKNCQNLDRNAFGPDSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVRESGDVVQLFAAEEYSSRCALVNYRVKQFVYTCIRAVHHNRYHLKDQLLLTPKESNASAIPLLEVLVLLIDLKLPWSCKIVACLSKNNAFSLLREIILTGKDNAENCIYSEKGSSLERVLTVVICHIGQKPCICSPTDPVYSFSSQILTIPFLWHVFPNLKQVFAKQGLGQHYVHRMATWLPNLINSLPNDISDECPTYACLLGNILETGGIALSRPDCSFDMAIDLASVTTFLLESYPSPTRSDGRENSKIAEDEITGDDEVMEVVLDRKLIQQISNAIDTRFLLQLINILFRDFSSANDSDREPEDREVAAVGAVCGFLHVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENKKWSSLSERLSYLSGDAPGWLLPLSVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLLWVNHTTSANLVKSVPVSTAIKKQFEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDYFISQAVIENTRANEILKQAPFLIPFTSRAKIFTSQLAAARQRHGSQAVFTRNRFKIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGKNTRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGGYHSEHYVIEMFWEVLKGFSLENKKNFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNTSEEALDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01134 1031 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Phco11g01134 1031 Gene3D Hect, E3 ligase catalytic domains 671 909 - -
Phco11g01134 1031 Gene3D Hect, E3 ligase catalytic domain 795 874 - -
Phco11g01134 1031 MobiDBLite consensus disorder prediction 11 28 - -
Phco11g01134 1031 Gene3D Hect, E3 ligase catalytic domain 913 1030 - -
Phco11g01134 1031 FunFam Putative Ubiquitin-protein ligase E3C 913 1030 - -
Phco11g01134 1031 SMART hect_3 688 1031 IPR000569 GO:0004842
Phco11g01134 1031 ProSiteProfiles HECT domain profile. 690 1031 IPR000569 GO:0004842
Phco11g01134 1031 FunFam Putative Ubiquitin-protein ligase E3C 795 874 - -
Phco11g01134 1031 MobiDBLite consensus disorder prediction 1 28 - -
Phco11g01134 1031 CDD HECTc 669 1029 IPR000569 GO:0004842
Phco11g01134 1031 SUPERFAMILY Hect, E3 ligase catalytic domain 660 1023 IPR035983 GO:0004842
Phco11g01134 1031 Pfam HECT-domain (ubiquitin-transferase) 726 1031 IPR000569 GO:0004842
Phco11g01134 1031 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1031 IPR044611 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01134 Phco-Chr11 8434895 8458566 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01134 11 8434895 8458566 Phco11g01134 11 8434895 8458566 ECH
Phco8g02096 8 22363985 22385642 Phco11g01134 11 8434895 8458566 PCT