Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02095 ATGGAAGCAAGTTGTGCGACGGATGTTGCACGGTGGCGTTCTCTGCAAGAGAGAACCAAAGGTTTCCTATTCCAAGACGTCTCTGCAACCTGTGCTCATAAACAAACTAATGCTCTCATCTCTCAGCTAGACTTCATAGCTCCCACTCACCCATCCCCGTCATGGAACTGTAACACCACCGATAACTTTTTCCAGCAACCATTCGCTAACGAATGGGACATTATCTGTGGCAATGGCACCAAACAGATGGCTTCTCTTGCTCTTCAGTTCACCGCTCTCAAGTGCTCTCCACTCTCTTCTTCTCCCCTCTCCCAACCCTCCCTTTTCACCCAACATCGCCACAACCACAGGCGCTCTTCAACTCCCATTGTCAACTCAATAGCACTATCCAACGCACAGAACAAAGAGAGAACCCAGCTCAAGAAGCTCTTCGAGGAAGCCTACGAGAGATGCCGCACTGCTCCCATGGAAGGTGTCTCCTTCACGCTCGAAGACTTCACTGCCGCTCTCGAGAAGTATGACTTTGATTCTGAAGTTGGATCCAAGGTTAAAGGTACTGTGTTCTACACGGATAACAATGGAGCAGTTGTTGACATCACTGCAAAGTCCTCGGCGTATTTGCCACTACAGGAAGCGAGCATCCGCAGGGTTAAGCACGTGCAAGAAGCGGGCATAGTGGCTGGGTTGAGAGAGGAGTTTTTGATCATTGGTGAGAATCAAGCGGATGATAGCTTGATCTTGAGTTTAAGGTCGATTCAGTATGATCTTGCATGGGAACGTTGTAGGCAGCTTCAGGCAGAAGATGCTTCTGTGAAGGGTAAGATTGTGGGAGTGAACAAAGGTGGAGTGGTGGCTGAAGTGGAAGGGCTTAGAGGGTTTGTTCCACTGTCACAATTGTCAACGAACTCAAATATAGAAGAGCTTCTTGAAAGGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGTAATCGCAAGGCCATTGCTGGCAACCAGGCACAGCTCGGAATTGGTTCAGTGGTTACTGGTTCTGTTCAAAGTCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACCGATATCTCAACTGTTCTTCAACCTGGTGACATATTAAAGGTGATGATCTTAAGTCATGACCGTGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATCCGCAATCCAAAGCTTGTCTTTGAGAAGGCCGAGGACATGGCTCAAACGTTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGACATGCTTAGGTTCCAGCCTGAGAGTGGATTGACTCTCAGCGGTGATGGGATCCTGGGACAATTTACTTCAGACTTGCCCGAAGAGGGACTAGATCTGAGTGAGGTGCCACCAGCTGAAGAATCATGA 1488 0.4839 MEASCATDVARWRSLQERTKGFLFQDVSATCAHKQTNALISQLDFIAPTHPSPSWNCNTTDNFFQQPFANEWDIICGNGTKQMASLALQFTALKCSPLSSSPLSQPSLFTQHRHNHRRSSTPIVNSIALSNAQNKERTQLKKLFEEAYERCRTAPMEGVSFTLEDFTAALEKYDFDSEVGSKVKGTVFYTDNNGAVVDITAKSSAYLPLQEASIRRVKHVQEAGIVAGLREEFLIIGENQADDSLILSLRSIQYDLAWERCRQLQAEDASVKGKIVGVNKGGVVAEVEGLRGFVPLSQLSTNSNIEELLERELPLKFVEVDEEQSRLVLSNRKAIAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEDMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDGILGQFTSDLPEEGLDLSEVPPAEES 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02095 495 SUPERFAMILY Nucleic acid-binding proteins 175 275 IPR012340 -
Phco8g02095 495 FunFam 30S ribosomal protein S1, chloroplastic 262 338 - -
Phco8g02095 495 SMART S1_6 178 250 IPR022967 -
Phco8g02095 495 SMART S1_6 266 332 IPR022967 -
Phco8g02095 495 SMART S1_6 343 413 IPR022967 -
Phco8g02095 495 ProSiteProfiles S1 domain profile. 268 332 IPR003029 GO:0003676
Phco8g02095 495 Gene3D - 340 417 IPR012340 -
Phco8g02095 495 PRINTS Ribosomal protein S1 signature 198 212 IPR035104 -
Phco8g02095 495 PRINTS Ribosomal protein S1 signature 271 287 IPR035104 -
Phco8g02095 495 PRINTS Ribosomal protein S1 signature 180 198 IPR035104 -
Phco8g02095 495 PRINTS Ribosomal protein S1 signature 316 336 IPR035104 -
Phco8g02095 495 Pfam S1 RNA binding domain 266 330 IPR003029 GO:0003676
Phco8g02095 495 Pfam S1 RNA binding domain 344 413 IPR003029 GO:0003676
Phco8g02095 495 ProSiteProfiles S1 domain profile. 180 250 IPR003029 GO:0003676
Phco8g02095 495 Coils Coil 430 450 - -
Phco8g02095 495 ProSiteProfiles S1 domain profile. 345 413 IPR003029 GO:0003676
Phco8g02095 495 CDD S1_RPS1_repeat_hs4 345 413 - -
Phco8g02095 495 FunFam 30S ribosomal protein S1 164 261 - -
Phco8g02095 495 MobiDBLite consensus disorder prediction 469 495 - -
Phco8g02095 495 SUPERFAMILY Nucleic acid-binding proteins 344 423 IPR012340 -
Phco8g02095 495 CDD S1_RPS1_repeat_ec2_hs2 268 332 - -
Phco8g02095 495 FunFam 30S ribosomal protein S1 341 420 - -
Phco8g02095 495 PANTHER 30S RIBOSOMAL PROTEIN S1 112 482 - -
Phco8g02095 495 Gene3D - 163 260 IPR012340 -
Phco8g02095 495 Gene3D - 261 339 IPR012340 -
Phco8g02095 495 SUPERFAMILY Nucleic acid-binding proteins 269 337 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02095 Phco-Chr8 22355523 22362883 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02095 8 22355523 22362883 Phco8g02095 8 22355523 22362883 ECH
Phco8g02095 8 22355523 22362883 Phco11g01132 11 8413104 8416651 PCT