Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02070 ATGGCTTCCCTATCTCTCTCCTTTTCTTCTTCCATTGTTCCCTCTCCAATTCCCAGCCACAAATCTAACAGAACCCACACTCAACACTCCACTTTTAGGGTTACCTGCTTCGCCGTTTCCTCTCCCCCCTCCAAACCCGTTGTCAAAAAGAGACACTGGAAAAAAGGTGAGTTCCCTGGTACTTCGGAAACATTTTTACACGATAATACGAGGAGGAACCCCATCAAGAACATCAAGAAGAAGTTGGAGAAAAAGAACAGTGCGAAGGCATGGGTCAACACTGTCACCGAATCCTTGTCTGAACAAATCGACAAGAAACAGTGGCTTCAAGCCCTTCAGGTATTTGATATGCTTAGAGAACAAACCTTCTACAGACCCAAAGAAGGGGCTTACATGAAACTCATTGTGCTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCACCAACTTTTCACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTCATCTGTACACAGCATTGCTTGCTGCGTATTGCAGGAGCAACCTTATTGATGAAGCTTTTTCAGTTCTTAATGAGATGAAGAAACTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTGGATGCTTTCAAATTTGATTTGGTTGAGTTATTGTATGAAGAAATGGCTGAAAGGTCCGTCACGCCAAACACAGTAACTCAAAATATTGTTTTGGGTGGTTATGGTAAGGCAGGGAAGTTTGATCAGATGGAGAAAGTGCTTTCCAGCATGCTCGAGAGCACTACCTGCAAACCTGATGTTTGGACAATGAACACGATCATCAGTGTCTTTGGTAACATTGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGAAATTTTGGCATAGAACCTGAAACGCGCACTTTCAATATTTTGATTGGTGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTTTATGCGAAGGTTGCAATTTCCATGGACAACCTCGACTTTTAACAATGTGATTGAGGCATTTGCAGATGCAGGTGACGTGAGGCACATGGAATGTACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAAAGGTTATGCAAATGCAGGTCTCTTTCATAAAGTAATTAGCAGTGTTCACTTGGCTGGAAAGTTTGAGATCCCTCAAAATATTGCCTTTTATAACGCAGTCTTATCTGCATGTGCAAAGGCAGAGGATTTGATGGAAATGGAAAGAGTTTTTAAGCGTATGAAAGATAACCAATGTCAACCAGACGAAACAACATACATGATCATGATTGAAGCATATAAAAAAGACAGTATGAATGACAAAATATACTATTTGGAGCAGGAAAAACAGACAATGATAACTGACAATAAAAAAGTGAGCCGTTCCGAGGATGATATCTTTAGTTCAGACAGTTAA 1482 0.4089 MASLSLSFSSSIVPSPIPSHKSNRTHTQHSTFRVTCFAVSSPPSKPVVKKRHWKKGEFPGTSETFLHDNTRRNPIKNIKKKLEKKNSAKAWVNTVTESLSEQIDKKQWLQALQVFDMLREQTFYRPKEGAYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPHLYTALLAAYCRSNLIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSVTPNTVTQNIVLGGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNIGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRRLQFPWTTSTFNNVIEAFADAGDVRHMECTFDQMRAEGMKADTKTFCCLIKGYANAGLFHKVISSVHLAGKFEIPQNIAFYNAVLSACAKAEDLMEMERVFKRMKDNQCQPDETTYMIMIEAYKKDSMNDKIYYLEQEKQTMITDNKKVSRSEDDIFSSDS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02070 493 Pfam PPR repeat family 340 387 IPR002885 -
Phco8g02070 493 Pfam PPR repeat family 409 455 IPR002885 -
Phco8g02070 493 Pfam PPR repeat family 165 209 IPR002885 -
Phco8g02070 493 Pfam PPR repeat family 268 315 IPR002885 -
Phco8g02070 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Phco8g02070 493 Gene3D Tetratricopeptide repeat domain 64 228 IPR011990 GO:0005515
Phco8g02070 493 Gene3D Tetratricopeptide repeat domain 358 491 IPR011990 GO:0005515
Phco8g02070 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Phco8g02070 493 Pfam PPR repeat 131 159 IPR002885 -
Phco8g02070 493 Pfam PPR repeat 238 263 IPR002885 -
Phco8g02070 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Phco8g02070 493 MobiDBLite consensus disorder prediction 1 26 - -
Phco8g02070 493 PANTHER EXPRESSED PROTEIN 28 474 IPR044179 GO:0003729
Phco8g02070 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Phco8g02070 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Phco8g02070 493 Gene3D Tetratricopeptide repeat domain 253 357 IPR011990 GO:0005515
Phco8g02070 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Phco8g02070 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 268 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 342 374 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 165 192 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 307 334 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 413 445 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 272 303 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 235 270 IPR002885 -
Phco8g02070 493 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02070 Phco-Chr8 22032120 22034276 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02070 8 22032120 22034276 Phco8g02070 8 22032120 22034276 ECH
Phco8g02070 8 22032120 22034276 Phco7g02595 7 44826893 44829291 PCT