Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02595 ATGGTTTCAATATCCCTCTGTCTTTCTTCTTCCATTTTTCCTTCTCCCATTCCACATTCCAAATTTCCCACAACCCAAGATCCAATTTTTCGGGTCACCCGCTTCTCGGTTTCTGCTCCATCAAAAACCAGTGTCTCTGCCTATTCTACCCGAAAACCAGCTCCAGCAACCAAAACCAGAAACCCGAAAGATAAGGAATTTTCCCAAACACTGTTCTTTGAGGGTATGGAGAAGGCACCCATCAAGAAGAAGAAGAAAAAGAAGGAGAAAAGGAAGAGTGATAAGTTCTGGGTACACACTCTCCCTGAAGTCTTGTACTATCACATTCATAAGAAGGACTGGGTTATTGCCCTTGAGTTATTTGACATGCTTAGAGGCCAACCCTATTACCAACCCAGAGAAGATACTTACATGAGACTCATTGTGTTGCTTGGAAAATCTGGCCAACCCCATCGTGCCAATGAGCTTTTTAACTCTATACATGAAGACGGTTGCCAAAGTACTGAACTTTACACGGCCTTAATCATAGCTTATTGTCAAAATAATTTGGTTGATGAGGCATTGTCGATTCTTGATGAGATGATGAACATCCCCGATTGCCAGCCTGATATTTTAACTTACAGTACCTTGATGAAAGCTCTTGTGGATGCTTTGAAGTTTGAAATGCTTGAGTTGGTGTATGATAAAATGGTTGAAAGATCTATCGTGCCAACCACTCTCACCCAGAACCTCCTCCTGAGTGGTTTTGGTAAGACTGGGAGGTTTGATCAGGTGGAGAAAATAGTGTCAAGTATGCTGGAGAGCACTACCTGCAAGCCTGATGTTTGGACAATGAACGCGGTCATTGGCATCTTTCGTGATGAGGGTCAGATCGATATGATGGAGAAATGGTATGAGAAATTTTGTAGTTTTGGGATACAACCACAAAGGAGCACTTTCAACATTTTAATGGGAGCTTATAGTAAAAAAAGAATGTATGACAAAATGTCATCAGTGATGCAGTGTATGCACAAGGAAAAATGTCCATGGACAACCCCAACTTACAACTTCGTGATTGAGGCGTTTGCAGATGCAGGTGATGCTGCAAACATGGAACGTGCATTTGATCAAATGGCTGCTGAGGGTTTGAAAGCAGATACCAAGACTATCTGCTGCCTTATCAATGGCTATGCCAAGGCAGGAATCTTCTATAAAGTAATGAGTAGTGTTGTTTTGGCTGAGAAGCTTCAGATACATATGAATACTTCATTGTACAATGCAGTTATATCTGCCTGTGCCAAGGAGGATTCTTTGATTGAAATGGAAAGATTTTTCAATCGTATGAAAGAAAAAGAATGTAAACCAGATGAAACAACATACTCTGTCATGATTGAAGCATACAGAAAAGCAAATATGAACGATAAAATACACTATTTGGAGCAAGAAAAACAGATGATGATATCTGATGAGAAAAGCTTGAATGAGCCTCAGGAGACAATCTTTGATTGA 1488 0.4052 MVSISLCLSSSIFPSPIPHSKFPTTQDPIFRVTRFSVSAPSKTSVSAYSTRKPAPATKTRNPKDKEFSQTLFFEGMEKAPIKKKKKKKEKRKSDKFWVHTLPEVLYYHIHKKDWVIALELFDMLRGQPYYQPREDTYMRLIVLLGKSGQPHRANELFNSIHEDGCQSTELYTALIIAYCQNNLVDEALSILDEMMNIPDCQPDILTYSTLMKALVDALKFEMLELVYDKMVERSIVPTTLTQNLLLSGFGKTGRFDQVEKIVSSMLESTTCKPDVWTMNAVIGIFRDEGQIDMMEKWYEKFCSFGIQPQRSTFNILMGAYSKKRMYDKMSSVMQCMHKEKCPWTTPTYNFVIEAFADAGDAANMERAFDQMAAEGLKADTKTICCLINGYAKAGIFYKVMSSVVLAEKLQIHMNTSLYNAVISACAKEDSLIEMERFFNRMKEKECKPDETTYSVMIEAYRKANMNDKIHYLEQEKQMMISDEKSLNEPQETIFD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02595 495 Pfam PPR repeat 136 165 IPR002885 -
Phco7g02595 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Phco7g02595 495 Gene3D Tetratricopeptide repeat domain 400 479 IPR011990 GO:0005515
Phco7g02595 495 Pfam PPR repeat family 170 215 IPR002885 -
Phco7g02595 495 Pfam PPR repeat family 414 460 IPR002885 -
Phco7g02595 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Phco7g02595 495 Pfam Pentatricopeptide repeat domain 226 285 IPR002885 -
Phco7g02595 495 Pfam Pentatricopeptide repeat domain 305 356 IPR002885 -
Phco7g02595 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Phco7g02595 495 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 171 470 - -
Phco7g02595 495 Gene3D Tetratricopeptide repeat domain 98 268 IPR011990 GO:0005515
Phco7g02595 495 Gene3D Tetratricopeptide repeat domain 269 399 IPR011990 GO:0005515
Phco7g02595 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 202 IPR002885 -
Phco7g02595 495 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Phco7g02595 495 NCBIfam pentatricopeptide repeat 206 238 IPR002885 -
Phco7g02595 495 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Phco7g02595 495 NCBIfam pentatricopeptide repeat 170 196 IPR002885 -
Phco7g02595 495 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Phco7g02595 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02595 Phco-Chr7 44826893 44829291 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02595 7 44826893 44829291 Phco7g02595 7 44826893 44829291 ECH
Phco8g02070 8 22032120 22034276 Phco7g02595 7 44826893 44829291 PCT