Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01964 ATGGTGGAGACCTCCACGCTAGGGCGCTTCCACCACCAAAGGCTCGACCTTCGCCGCTGGCTCCCCGCCATCCTCACCTCCCACAAAACCCTCTTCACCGTGCTCTGGATCGCCGCCTTTGCCTCCCTTTTCCTCTGGCAGAGGAACATTGTCGGCGGCTTCCTCGTCTTCGGCGCTCCTCCGGCCAGGCCAATGCCCAAGCTCCGCCCCACCGCCTTCAATCTAACGGATTTCGGAGGCGTCGGCGACGGCGTCACTATCAACACCGAGGCCTTCGAGAGGGCCGTTTCTGCGATTTCGAAGTTTGGGAAGAAAGGCGGTGCGCAGTTAAACGTGCCTCCCGGACGCTGGCTTACGGCGCCGTTTAATCTCACCAGCCACATGACTTTGTTCCTAGCTCAAGATGCTGTTATTCTCGGCATTGATGATGAAAAATATTGGTCTCTGATGGCTCCATTGCCTTCATATGGTTATGGGAGGGAGCATCCTGGGCCACGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATGTTGTGATAACAGGGCATAATGGTACCATAAATGGTCAAGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCACTAATATTACTTTGCGTGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGGGTAACTATCCTGGCTCCTGTGTTTGAAGCTCCAAATACTGATGGCATTGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTTCATATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCGTCTCAATAGGCAGTGAGATGTCTGGCGGAGTATCCAACATCACGGTGGAGAATCTTCTCGTATGGGATTCTAGGCGTGGTGTGAGGATCAAGACCGCCCCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGGAATCTAACATTTGAGAATGTCCGTGTTGGAATTGTTATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGACCCTACATCACTCCCAATTCTGAGAGACATAAGCTTTACCACAATCCACGGCCATGGGGTTCGCGTGCCAGTACGTATACACGGTAGTGAAGAGATTCCTGTGAAAAATGTGACTTTTCAAGACATGTCAGTTGGTCTAACCTACAAGAGGAAGCATATCTTTCAGTGTGCCTTTGTTGAAGGCCGTGTAATAGGGACCATCTTTCCTCCTCCCTGTGAGAACCTGGATCTGTACAATGAGCATGGACAGCTGGTTAAGCATTCTGCATCCCAGAATGTGACAGATATAGATTATGATTTTTGA 1476 0.4851 MVETSTLGRFHHQRLDLRRWLPAILTSHKTLFTVLWIAAFASLFLWQRNIVGGFLVFGAPPARPMPKLRPTAFNLTDFGGVGDGVTINTEAFERAVSAISKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAQDAVILGIDDEKYWSLMAPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGISYGRPSMNIMIRNLVVRSMVSAGVSIGSEMSGGVSNITVENLLVWDSRRGVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDPTSLPILRDISFTTIHGHGVRVPVRIHGSEEIPVKNVTFQDMSVGLTYKRKHIFQCAFVEGRVIGTIFPPPCENLDLYNEHGQLVKHSASQNVTDIDYDF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01964 491 SMART pbh1 330 351 IPR006626 -
Phco8g01964 491 SMART pbh1 240 267 IPR006626 -
Phco8g01964 491 SMART pbh1 302 324 IPR006626 -
Phco8g01964 491 SMART pbh1 393 415 IPR006626 -
Phco8g01964 491 SMART pbh1 420 441 IPR006626 -
Phco8g01964 491 SMART pbh1 359 380 IPR006626 -
Phco8g01964 491 SMART pbh1 268 289 IPR006626 -
Phco8g01964 491 Pfam Glycosyl hydrolases family 28 168 450 IPR000743 GO:0004650|GO:0005975
Phco8g01964 491 SUPERFAMILY Pectin lyase-like 61 464 IPR011050 -
Phco8g01964 491 Gene3D - 62 451 IPR012334 -
Phco8g01964 491 PANTHER PECTIN LYASE-RELATED 48 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01964 Phco-Chr8 20858946 20866525 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01964 8 20858946 20866525 Phco8g01964 8 20858946 20866525 ECH
Phco8g01964 8 20858946 20866525 Phco7g02665 7 45618465 45622119 PCT