Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02665 ATGGTGGAGAATTCAGGGGTACTCGGCTGGTTCCTCCTCAACCCCAAAACGCCACCTTTCGCTTCTCACAAGACCCTCTTCGCGTTCCTGTGGGTGGCGGCGCTGGCCTCGCTTTTCGTGTGGCAGAGGAACACGATCAGCGGGTTTCTCGTGCTGGGTGGTGTTCCGGTGCGGCAGCCGTCGAAGCTGCGGCCGGTGGTTTTCTGTTTGACTGAGTTTGGTGGGGTCGGTGACGGCGTTACTCTCAACACTGAGGCGTTTGAGAGAGGCGTTAGTGCCATCTCCAAGTTGGGGAATAAGGGTGGCGGCCAACTCAGTGTGCCACCTGGACGTTGGCTCACCGCACCCTTCAACCTCACCAGTCACATGACTCTTTTTCTTGCTTCTGATGCTGTTATACTTGCAATTCAGGATGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCATATGGGTATGGAAGAGAGCATCCTGGGCCTCGATATACTAGTTTGATCCATGGTCAAAATCTTAGAGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGGCAGGGACAAACATGGTGGACAAAATATCGCCAAAAGCTTCTGAACCACACTAGGGGGCCACTTGTTCAGATATTATGGTCTAGTAACATTGTGATATCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGTAAAAATGTTACAGTGAAAAACGTTACCATATTGGCTCCTGTATATCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTCGGGGATGATGCAATTGCAATAAAAAGTGGATGGGATCAATATGGAATTACTTATGGAAGGCCTTCCAGGAATATAGTCATTCGAAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTGCTGGTGGAGAACATCCTCGTATGGGAATCAAGACGTGCCATGAGAATCAAGACTGCACCAGGAAGAGGTGGATATGTGCGCCAAATAACTTACAGGAACCTAGTTTTCAAAAACGTGCGTGTTGGAATTGTGATAAAGACAGATTACAACGAGCACCCTGGTGGTGGATACGATCCTAAAGCACTTCCAATACTCAGAGACATAAGCTTCATCAATATCCGTGGGCAAGGAGTTCGTGTGCCAGTGCGTATTCAAGGCAGTGAACAGATTCCAATAAGAAATGTGACATTCGAGGACATGAAGGTTGGCATAACCTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTGCAAGGTCAGGCAATAGGGACCATCTCTCCTGCTCCATGTGACAACTTTGATCGGTACAATGAGCAAGGGCAGCTTGTTAAGCATGCTGCTTCACAGAATGTGACAGACATAGATTATGAAATTTGA 1461 0.4682 MVENSGVLGWFLLNPKTPPFASHKTLFAFLWVAALASLFVWQRNTISGFLVLGGVPVRQPSKLRPVVFCLTEFGGVGDGVTLNTEAFERGVSAISKLGNKGGGQLSVPPGRWLTAPFNLTSHMTLFLASDAVILAIQDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYRNLVFKNVRVGIVIKTDYNEHPGGGYDPKALPILRDISFINIRGQGVRVPVRIQGSEQIPIRNVTFEDMKVGITYKKKHIFQCAFVQGQAIGTISPAPCDNFDRYNEQGQLVKHAASQNVTDIDYEI 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02665 486 Gene3D - 56 450 IPR012334 -
Phco7g02665 486 PANTHER PECTIN LYASE-RELATED 43 469 - -
Phco7g02665 486 Pfam Glycosyl hydrolases family 28 163 446 IPR000743 GO:0004650|GO:0005975
Phco7g02665 486 SMART pbh1 297 319 IPR006626 -
Phco7g02665 486 SMART pbh1 415 436 IPR006626 -
Phco7g02665 486 SMART pbh1 263 284 IPR006626 -
Phco7g02665 486 SMART pbh1 354 375 IPR006626 -
Phco7g02665 486 SMART pbh1 235 262 IPR006626 -
Phco7g02665 486 SMART pbh1 325 346 IPR006626 -
Phco7g02665 486 SUPERFAMILY Pectin lyase-like 59 459 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02665 Phco-Chr7 45618465 45622119 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02665 7 45618465 45622119 Phco7g02665 7 45618465 45622119 ECH
Phco8g01964 8 20858946 20866525 Phco7g02665 7 45618465 45622119 PCT