Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01942 ATGATTCTCATTATCTGCCTCGTTTTCTCTCTTTTCTCCTTCTCCCATGCTTCTGTCCTAGATTTCTGCGTGGCGGATCATGCAGGTCCTATTGGTCCTGCAGGATACTCCTGCAAGAAGCCTTCAAAGGTCACAGCAGATGATTTTGCTTTCAGTGGCCTTGGCATTGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTGACCCCTGCATTTGATGCTCAGTTTGCTGGTCTCAATGGCCTTGGCATATCCGCAGCCCGCTTGGACTTAGCAGCAGGTGGAGTTATACCACTTCATACTCATCCTGGAGCTTCAGAATTACTTGTTGTGATACAAGGAAGCATCCTGGCAGGATTCATTTCATCTGACAACACTGTCTACCTCAAAACTCTTAAGAAGGGGGATGTTATGGTATTCCCTCAAGGCTTGCTGCACTTCCAAATCAATGCAGGTGGTTCTTCAGCCCTGGCTATTGTTAGCTTCAGTAGCTCCAATCCTGGTCTGCAAATTCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACACCACTGATAGTGGAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTTCAGGCTAA 627 0.4641 MILIICLVFSLFSFSHASVLDFCVADHAGPIGPAGYSCKKPSKVTADDFAFSGLGIAGNTSNIIKAAVTPAFDAQFAGLNGLGISAARLDLAAGGVIPLHTHPGASELLVVIQGSILAGFISSDNTVYLKTLKKGDVMVFPQGLLHFQINAGGSSALAIVSFSSSNPGLQILDFALFKSNFPTPLIVETTFLDAALVKKLKGVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01942 208 CDD cupin_OxOx 15 204 IPR001929 GO:0030145
Phco8g01942 208 FunFam Auxin-binding protein ABP19a 16 207 - -
Phco8g01942 208 SUPERFAMILY RmlC-like cupins 18 201 IPR011051 -
Phco8g01942 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Phco8g01942 208 SMART Cupin_1_3 52 198 IPR006045 -
Phco8g01942 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Phco8g01942 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Phco8g01942 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Phco8g01942 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Phco8g01942 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 199 - -
Phco8g01942 208 Pfam Cupin 55 182 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01942 Phco-Chr8 20581815 20582441 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01942 8 20581815 20582441 Phco7g02688 7 45828311 45829154 PCT